C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) II (DNA directed) polypeptide E
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004667 Polr2e 10090 - 10:80035949-80039795 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004786 Polr2e-001 80035949-80039795 protein_coding
  ENSMUST00000131743 Polr2e-003 80035951-80039650 retained_intron
  ENSMUST00000143438 Polr2e-002 80035949-80039710 retained_intron
  ENSMUST00000147507 Polr2e-004 80035949-80037185 retained_intron
  ENSMUST00000152843 Polr2e-005 80036175-80039701 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004786ENSMUST00000143438ENSMUST00000152843
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004786 74.301±6.94 44.822±2.24 66.328±16.18 52.639±27.14 53.979±18.30 67.738±8.87 73.516±11.69 92.988±3.27 58.354±35.62 86.455±3.70 22.887±0.92 124.915±47.21 83.526±35.90 39.076±14.84
ENSMUST00000143438 N/A 3.674±0.31 N/A N/A 4.588±1.63 4.498±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152843 N/A N/A 12.076±0.00 17.457±5.48 N/A 15.864±1.34 N/A N/A N/A N/A N/A 25.545±11.69 17.535±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_00030S CIL_00030S_0002 CGP 10:80016653-80039795
CIL_0000QU CIL_0000QU_0002 CGP 10:80035949-80056439

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001054 IBA RNA polymerase I activity
GO:0001055 IBA RNA polymerase II activity
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005665 ISS DNA-directed RNA polymerase II, core complex
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0005736 IBA DNA-directed RNA polymerase I complex
GO:0006360 IBA transcription from RNA polymerase I promoter
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0006383 IBA transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026183 polr2eb polymerase (RNA) II (DNA directed) polypeptide E, b protein_coding Danio_rerio
ENSDARG00000074274 POLR2E (2 of 2) polymerase (RNA) II (DNA directed) polypeptide E, 25kDa protein_coding Danio_rerio
ENSG00000099817 POLR2E polymerase (RNA) II (DNA directed) polypeptide E, 25kDa protein_coding Homo_sapiens

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