C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: breast carcinoma amplified sequence 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000005687 Bcas2 10090 + 3:103171655-103179166 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000005830 Bcas2-001 103171655-103179152 protein_coding
  ENSMUST00000135017 Bcas2-002 103171772-103179166 nonsense_mediated_decay
  ENSMUST00000136937 Bcas2-003 103171703-103178825 retained_intron
  ENSMUST00000139489 Bcas2-004 103171749-103178827 retained_intron
  ENSMUST00000147042 Bcas2-006 103171785-103174547 retained_intron
  ENSMUST00000155520 Bcas2-005 103171762-103178447 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005830ENSMUST00000135017ENSMUST00000136937ENSMUST00000139489ENSMUST00000147042ENSMUST00000155520
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005830 10.503±3.54 35.012±4.33 25.660±2.99 35.516±9.97 11.281±5.87 16.562±4.37 14.327±1.99 17.152±3.29 40.760±32.55 13.761±1.05 15.034±2.29 16.225±6.12 30.959±8.81 51.596±17.22
ENSMUST00000135017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.588±0.00
ENSMUST00000136937 1.424±0.55 N/A 2.680±0.57 3.331±0.40 1.323±0.50 1.459±0.33 0.752±0.02 1.100±0.14 5.466±2.96 1.515±0.15 0.731±0.00 2.292±0.56 2.584±0.69 N/A
ENSMUST00000139489 1.763±0.73 N/A N/A 4.850±1.34 1.684±0.52 2.204±0.00 N/A N/A 0.968±0.00 2.384±0.33 N/A 1.538±0.16 N/A N/A
ENSMUST00000147042 N/A 13.878±2.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155520 4.143±0.81 4.905±0.00 12.744±2.56 58.130±55.25 7.166±2.77 4.964±0.36 N/A 5.301±1.73 19.259±22.36 6.621±0.34 8.124±1.97 24.955±48.02 87.470±92.33 253.367±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003RY CIL_0003RY_0002 CGP 3:103102604-103179166
CIL_0006WV CIL_0006WV_0002 CGP 3:103171655-103358768

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 ISS mRNA splicing, via spliceosome
GO:0000974 ISS Prp19 complex
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005662 ISS DNA replication factor A complex
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0030054 IEA cell junction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043631 bcas2 breast carcinoma amplified sequence 2 protein_coding Danio_rerio
ENSG00000116752 BCAS2 breast carcinoma amplified sequence 2 protein_coding Homo_sapiens

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