C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CDK5 regulatory subunit associated protein 1-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000006191 Cdkal1 10090 - 13:29191746-29855674 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000006353 Cdkal1-001 29325301-29855674 protein_coding
  ENSMUST00000091674 Cdkal1-004 29802441-29855663 protein_coding
  ENSMUST00000110323 Cdkal1-005 29402593-29474607 protein_coding
  ENSMUST00000123641 Cdkal1-011 29708841-29855657 retained_intron
  ENSMUST00000124532 Cdkal1-010 29777296-29855431 protein_coding
  ENSMUST00000129231 Cdkal1-009 29836995-29855665 nonsense_mediated_decay
  ENSMUST00000131792 Cdkal1-003 29473868-29855643 retained_intron
  ENSMUST00000137225 Cdkal1-008 29521837-29855639 nonsense_mediated_decay
  ENSMUST00000140278 Cdkal1-007 29191746-29855647 nonsense_mediated_decay
  ENSMUST00000153086 Cdkal1-006 29514207-29855643 retained_intron
  ENSMUST00000154209 Cdkal1-002 29443776-29517454 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006353ENSMUST00000123641ENSMUST00000129231ENSMUST00000131792ENSMUST00000137225ENSMUST00000153086
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006353 2.074±0.31 0.877±0.46 3.352±0.80 1.211±0.27 1.513±0.52 0.862±0.30 2.344±0.22 2.265±0.26 1.460±0.21 1.989±0.50 5.504±0.48 1.339±1.15 2.368±0.94 8.118±2.38
ENSMUST00000123641 N/A N/A N/A 2.397±0.00 N/A N/A N/A N/A N/A N/A N/A 2.994±0.00 4.331±0.00 13.546±0.00
ENSMUST00000129231 N/A N/A N/A N/A N/A 0.726±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131792 N/A 0.300±0.09 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.728±0.14 N/A N/A
ENSMUST00000137225 N/A N/A N/A N/A 0.269±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153086 N/A 0.103±0.00 N/A N/A 0.108±0.00 0.113±0.03 N/A N/A N/A N/A N/A 0.127±0.01 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084D CIL_00084D_0002 VISTA 13:28658215-29260360
CIL_0005MW CIL_0005MW_0002 CGP 13:28948919-29855674

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0005791 IDA rough endoplasmic reticulum
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0035598 IMP N6-threonylcarbomyladenosine methylthiotransferase activity
GO:0035600 IMP tRNA methylthiolation
GO:0046872 IEA metal ion binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding
GO:1990145 IMP maintenance of translational fidelity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022122 cdkal1 CDK5 regulatory subunit associated protein 1-like 1 protein_coding Danio_rerio
ENSG00000145996 CDKAL1 CDK5 regulatory subunit associated protein 1-like 1 protein_coding Homo_sapiens

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