C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 4 (anion exchanger), member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000006576 Slc4a3 10090 + 1:75546266-75562172 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027415 Slc4a3-010 75546496-75558890 nonsense_mediated_decay
  ENSMUST00000124341 Slc4a3-001 75546266-75562172 protein_coding
  ENSMUST00000129703 Slc4a3-006 75546296-75547507 retained_intron
  ENSMUST00000132110 Slc4a3-011 75551709-75553732 nonsense_mediated_decay
  ENSMUST00000132612 Slc4a3-002 75546644-75560881 retained_intron
  ENSMUST00000138814 Slc4a3-005 75546533-75548011 protein_coding
  ENSMUST00000142257 Slc4a3-008 75549768-75551129 retained_intron
  ENSMUST00000145258 Slc4a3-012 75550595-75555125 nonsense_mediated_decay
  ENSMUST00000145516 Slc4a3-003 75546527-75547744 retained_intron
  ENSMUST00000150142 Slc4a3-004 75546462-75548038 protein_coding
  ENSMUST00000154101 Slc4a3-007 75549599-75551382 protein_coding
  ENSMUST00000189794 Slc4a3-013 75546656-75547534 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027415ENSMUST00000124341ENSMUST00000132612ENSMUST00000142257ENSMUST00000145258ENSMUST00000145516
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027415 N/A N/A N/A 30.727±0.00 0.565±0.00 1.753±0.03 33.493±0.00 N/A 0.124±0.10 N/A 1.185±0.34 6.427±2.18 1.228±0.77 N/A
ENSMUST00000124341 0.499±0.00 9.857±0.00 0.883±0.00 1.780±0.00 0.828±0.29 0.448±0.00 6.000±1.43 N/A 0.087±0.02 1.446±0.09 N/A 4.382±0.59 N/A 0.775±0.24
ENSMUST00000132612 2.008±0.96 24.793±4.57 2.396±0.44 8.135±4.90 1.021±0.19 1.579±0.44 10.588±5.84 1.119±0.39 0.162±0.08 1.732±0.24 0.426±0.09 4.894±1.58 0.722±0.60 0.824±0.19
ENSMUST00000142257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.999±0.00
ENSMUST00000145258 N/A N/A N/A N/A N/A N/A N/A N/A 0.188±0.10 N/A 1.225±0.00 5.549±0.00 0.339±0.00 N/A
ENSMUST00000145516 N/A N/A N/A N/A N/A N/A N/A N/A 0.285±0.08 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_00082R CIL_00082R_0002 VISTA 1:75469003-76073592
CIL_0006O3 CIL_0006O3_0002 CGP 1:75521529-75562172
CIL_0008ED CIL_0008ED_0002 VISTA 1:75532718-76135169
CIL_0006O4 CIL_0006O4_0002 CGP 1:75546266-77515088

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005452 IEA inorganic anion exchanger activity
GO:0005886 IDA plasma membrane
GO:0006820 IEA anion transport
GO:0015301 IDA anion:anion antiporter activity
GO:0016021 IEA integral component of membrane
GO:0051453 IDA regulation of intracellular pH
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053678 SLC4A3 solute carrier family 4 (anion exchanger), member 3 protein_coding Danio_rerio
ENSG00000114923 SLC4A3 solute carrier family 4 (anion exchanger), member 3 protein_coding Homo_sapiens

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