C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 5 (sodium-dependent vitamin transporter), member 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000006641 Slc5a6 10090 - 5:31036036-31048924 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000006817 Slc5a6-003 31036037-31048009 protein_coding
  ENSMUST00000080431 Slc5a6-001 31036036-31048924 protein_coding
  ENSMUST00000114665 Slc5a6-004 31036036-31048002 protein_coding
  ENSMUST00000114668 Slc5a6-002 31036036-31048562 protein_coding
  ENSMUST00000127693 Slc5a6-006 31039352-31042605 protein_coding
  ENSMUST00000127781 Slc5a6-007 31036887-31037994 retained_intron
  ENSMUST00000137223 Slc5a6-005 31043095-31048079 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENSMUST00000006817ENSMUST00000080431ENSMUST00000114665ENSMUST00000114668ENSMUST00000137223
Transcript ID Adrenal Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006817 7.920±1.82 4.066±1.03 14.804±5.96 7.686±0.00 3.527±0.71 4.378±0.68 N/A 7.966±1.71 58.590±0.00 2.157±0.00
ENSMUST00000080431 N/A N/A N/A N/A 5.085±0.00 N/A 3.091±0.26 N/A 19.154±0.00 N/A
ENSMUST00000114665 N/A N/A N/A N/A N/A 4.833±1.03 2.280±0.00 4.608±1.33 N/A N/A
ENSMUST00000114668 N/A 3.628±0.35 N/A N/A N/A N/A 1.968±0.00 N/A 1.593±0.00 0.284±0.00
ENSMUST00000137223 N/A 13.999±0.00 N/A N/A N/A N/A N/A N/A 49.911±37.85 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EJ CIL_0000EJ_0002 CGP 5:30968677-31048924
CIL_0000EI CIL_0000EI_0002 CGP 5:31036036-31054633

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006814 IEA sodium ion transport
GO:0008523 IEA sodium-dependent multivitamin transmembrane transporter activity
GO:0012506 IEA vesicle membrane
GO:0015878 IEA biotin transport
GO:0015887 IEA pantothenate transmembrane transport
GO:0016021 IEA integral component of membrane
GO:0031526 IEA brush border membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014599 slc5a6 solute carrier family 5 (sodium-dependent vitamin transporter), member 6 protein_coding Danio_rerio
ENSDARG00000042859 SLC5A6 (2 of 2) solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6 protein_coding Danio_rerio
ENSG00000138074 SLC5A6 solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6 protein_coding Homo_sapiens

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