C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000008489 Elavl2 10090 - 4:91250763-91400785 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000008633 Elavl2-002 91250763-91372054 protein_coding
  ENSMUST00000102799 Elavl2-001 91250763-91399984 protein_coding
  ENSMUST00000107109 Elavl2-004 91253240-91376434 protein_coding
  ENSMUST00000107110 Elavl2-008 91250763-91372034 protein_coding
  ENSMUST00000107111 Elavl2-005 91253240-91376434 protein_coding
  ENSMUST00000107116 Elavl2-007 91253240-91313403 protein_coding
  ENSMUST00000107118 Elavl2-011 91250763-91372069 protein_coding
  ENSMUST00000107120 Elavl2-003 91250763-91376463 protein_coding
  ENSMUST00000107124 Elavl2-201 91250769-91376496 protein_coding
  ENSMUST00000128599 Elavl2-012 91253080-91254582 retained_intron
  ENSMUST00000144769 Elavl2-009 91380432-91399976 processed_transcript
  ENSMUST00000147611 Elavl2-010 91308677-91373030 protein_coding
  ENSMUST00000176151 Elavl2-006 91399895-91400785 processed_transcript
  ENSMUST00000176362 Elavl2-015 91308771-91371956 protein_coding
  ENSMUST00000176469 Elavl2-014 91258666-91376307 retained_intron
  ENSMUST00000177109 Elavl2-013 91264102-91356682 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000008633ENSMUST00000102799ENSMUST00000107109ENSMUST00000107110ENSMUST00000107111ENSMUST00000107116ENSMUST00000107118ENSMUST00000107120ENSMUST00000107124ENSMUST00000128599ENSMUST00000147611ENSMUST00000176362ENSMUST00000176469ENSMUST00000177109
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000008633 N/A N/A 0.127±0.00 7.258±3.12 N/A N/A 0.049±0.00 0.084±0.00 0.036±0.00 N/A 1.469±0.78 N/A 0.414±0.09
ENSMUST00000102799 N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000107109 N/A 0.220±0.07 N/A N/A N/A N/A N/A 0.047±0.00 0.032±0.00 N/A 0.775±0.00 N/A N/A
ENSMUST00000107110 0.050±0.02 N/A N/A N/A 0.073±0.03 0.106±0.01 0.021±0.00 N/A 0.032±0.02 0.064±0.00 1.516±0.35 0.043±0.03 0.514±0.29
ENSMUST00000107111 0.030±0.00 N/A N/A N/A 0.046±0.01 N/A 0.057±0.00 N/A 0.055±0.00 0.035±0.00 0.943±0.00 0.048±0.00 0.434±0.04
ENSMUST00000107116 0.052±0.00 N/A N/A N/A N/A 0.141±0.00 0.089±0.02 0.056±0.02 N/A 0.035±0.00 N/A 0.013±0.00 0.430±0.00
ENSMUST00000107118 N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A N/A N/A 0.304±0.00
ENSMUST00000107120 N/A N/A N/A 5.899±3.22 N/A N/A N/A 0.042±0.00 0.087±0.00 N/A 0.201±0.00 N/A N/A
ENSMUST00000107124 N/A 0.019±0.00 N/A 15.669±1.23 N/A 0.064±0.00 0.076±0.00 0.063±0.00 0.016±0.00 0.036±0.00 N/A N/A N/A
ENSMUST00000128599 N/A N/A N/A N/A N/A 0.056±0.00 0.109±0.07 N/A 0.012±0.00 N/A N/A N/A N/A
ENSMUST00000147611 N/A 0.493±0.06 N/A N/A 0.165±0.00 0.204±0.12 0.114±0.00 0.270±0.08 N/A 0.118±0.00 5.392±2.68 N/A 2.695±0.60
ENSMUST00000176362 N/A 0.092±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176469 0.026±0.00 N/A N/A N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A 0.014±0.00 N/A
ENSMUST00000177109 N/A N/A N/A 61.090±0.00 N/A N/A 0.260±0.04 N/A 0.072±0.00 N/A 4.350±0.00 0.166±0.00 4.153±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VP CIL_0007VP_0002 VISTA 4:90727482-91328588
CIL_00074G CIL_00074G_0002 CGP 4:91250763-92147234

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040732 elavl2 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) protein_coding Danio_rerio
ENSG00000107105 ELAVL2 ELAV like neuron-specific RNA binding protein 2 protein_coding Homo_sapiens

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