C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synapsin II
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000009394 Syn2 10090 + 6:115134902-115282626 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000009538 Syn2-201 115134902-115282626 protein_coding
  ENSMUST00000169345 Syn2-202 115134902-115276559 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000009538ENSMUST00000169345
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000009538 1.376±0.09 3.805±1.59 1.192±0.05 7.130±5.06 4.195±1.07 1.672±0.64 0.459±0.07 1.876±0.23 0.018±0.01 1.813±0.31 N/A 1.788±0.85 0.136±0.16 1.198±0.30
ENSMUST00000169345 2.344±0.08 5.408±2.59 5.987±1.00 24.907±16.61 3.974±1.09 1.926±0.93 1.429±0.22 2.367±0.28 0.030±0.02 3.819±0.38 0.237±0.00 1.986±1.28 0.077±0.05 1.275±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SM CIL_0005SM_0002 CGP 6:115004381-115282626

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005524 IEA ATP binding
GO:0007269 IGI neurotransmitter secretion
GO:0008152 IEA metabolic process
GO:0030054 IEA cell junction
GO:0030672 IDA synaptic vesicle membrane
GO:0045202 IDA synapse
GO:0046983 TAS protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045945 syn2a synapsin IIa protein_coding Danio_rerio
ENSDARG00000078971 SYN2 (2 of 2) synapsin II protein_coding Danio_rerio
ENSG00000157152 SYN2 synapsin II protein_coding Homo_sapiens

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