C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: upstream binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000009741 Ubp1 10090 + 9:113930934-113977199 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000009885 Ubp1-201 113930934-113977199 protein_coding
  ENSMUST00000084885 Ubp1-202 113930934-113977199 protein_coding
  ENSMUST00000116492 Ubp1-203 113931564-113976817 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000009885ENSMUST00000084885ENSMUST00000116492
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000009885 8.450±1.73 N/A N/A 19.777±0.00 7.316±1.93 6.529±0.00 3.235±0.71 6.966±2.09 6.417±3.28 6.155±0.76 1.836±0.37 9.851±1.98 6.597±2.22 N/A
ENSMUST00000084885 15.568±2.03 12.523±4.29 8.657±0.32 17.894±14.68 12.235±1.88 11.256±3.32 10.251±0.94 11.647±0.84 7.766±3.02 16.458±4.04 3.794±0.88 14.806±8.71 7.864±3.90 1.668±0.00
ENSMUST00000116492 N/A N/A 10.359±0.00 N/A N/A N/A N/A N/A 17.236±5.56 N/A N/A N/A 9.756±3.93 15.996±1.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DD CIL_0003DD_0002 CGP 9:113812586-113977199

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IMP angiogenesis
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018000 ubp1 upstream binding protein 1 (LBP-1a) protein_coding Danio_rerio
ENSG00000153560 UBP1 upstream binding protein 1 (LBP-1a) protein_coding Homo_sapiens

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