C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: opticin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000010311 Optc 10090 - 1:133897199-133907999 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000124051 Optc-001 133897199-133907172 protein_coding
  ENSMUST00000124245 Optc-005 133897199-133901327 retained_intron
  ENSMUST00000126123 Optc-004 133900834-133907002 protein_coding
  ENSMUST00000149380 Optc-003 133897699-133907126 protein_coding
  ENSMUST00000153617 Optc-002 133897200-133907999 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000124051ENSMUST00000124245ENSMUST00000126123ENSMUST00000149380ENSMUST00000153617
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000124051 1.112±0.10 0.147±0.05 N/A 0.790±0.26 0.159±0.07 N/A 0.072±0.04 0.132±0.00 0.029±0.00 0.188±0.03 N/A 0.703±0.19 N/A 0.338±0.12
ENSMUST00000124245 1.999±0.61 N/A 16.983±0.00 0.061±0.00 0.066±0.01 2.032±0.44 0.076±0.00 N/A 0.011±0.01 N/A 0.019±0.00 0.761±0.17 N/A 0.128±0.10
ENSMUST00000126123 N/A 0.297±0.08 N/A 1.149±1.05 0.318±0.17 N/A N/A 0.090±0.00 0.074±0.03 N/A N/A N/A 0.094±0.00 N/A
ENSMUST00000149380 N/A 0.130±0.02 N/A N/A 0.163±0.05 N/A N/A N/A 0.026±0.01 N/A N/A N/A 0.075±0.00 N/A
ENSMUST00000153617 N/A N/A 48.810±0.00 0.448±0.13 N/A 4.658±2.47 N/A N/A 0.048±0.03 N/A 0.070±0.01 N/A 0.205±0.08 0.026±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096T CIL_00096T_0002 VISTA 1:133444227-134045719
CIL_0005VX CIL_0005VX_0002 CGP 1:133699457-133907999

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005578 IEA proteinaceous extracellular matrix
GO:0016525 IMP negative regulation of angiogenesis
GO:0031012 IDA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014358 optc opticin protein_coding Danio_rerio
ENSG00000188770 OPTC opticin protein_coding Homo_sapiens

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