C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAD52 motif 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000010362 Rdm1 10090 + 11:101627195-101636100 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000010506 Rdm1-001 101627942-101636100 protein_coding
  ENSMUST00000133727 Rdm1-004 101628389-101636072 nonsense_mediated_decay
  ENSMUST00000139037 Rdm1-003 101627972-101633832 processed_transcript
  ENSMUST00000152484 Rdm1-002 101627195-101630900 processed_transcript
  ENSMUST00000155222 Rdm1-005 101633737-101635960 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000010506ENSMUST00000139037ENSMUST00000152484ENSMUST00000155222
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000010506 12.825±0.28 12.268±1.32 16.059±1.47 6.685±3.29 15.692±3.83 11.238±2.14 19.084±1.96 21.203±1.91 5.077±1.31 12.117±2.36 15.544±1.20 11.411±2.50 7.369±2.72 4.071±1.43
ENSMUST00000139037 N/A N/A N/A N/A N/A N/A N/A N/A 0.821±0.00 N/A N/A N/A 1.135±0.48 2.068±0.57
ENSMUST00000152484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.898±1.24 6.298±3.00 3.453±0.00
ENSMUST00000155222 N/A N/A N/A 1.669±0.00 N/A N/A N/A N/A N/A N/A N/A 8.183±1.15 8.514±3.79 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000996 CIL_000996_0002 VISTA 11:101501412-102102123
CIL_00090X CIL_00090X_0002 VISTA 11:101529827-102131014
CIL_000997 CIL_000997_0002 VISTA 11:101567301-102168287

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038186 RDM1 RAD52 motif containing 1 protein_coding Danio_rerio
ENSG00000278023 RDM1 RAD52 motif containing 1 protein_coding Homo_sapiens

Loading