C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(A) binding protein, cytoplasmic 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000011257 Pabpc4 10090 + 4:123262351-123298925 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000078734 Pabpc4-002 123283095-123298832 protein_coding
  ENSMUST00000080178 Pabpc4-001 123282911-123298832 protein_coding
  ENSMUST00000106241 Pabpc4-004 123282832-123298832 protein_coding
  ENSMUST00000106243 Pabpc4-003 123282825-123298925 protein_coding
  ENSMUST00000124991 Pabpc4-006 123294964-123298006 processed_transcript
  ENSMUST00000146156 Pabpc4-007 123297180-123298832 retained_intron
  ENSMUST00000156807 Pabpc4-008 123262351-123286762 processed_transcript
  ENSMUST00000183940 Pabpc4-005 123282845-123298822 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078734ENSMUST00000080178ENSMUST00000106241ENSMUST00000106243ENSMUST00000124991ENSMUST00000146156ENSMUST00000183940
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078734 N/A N/A N/A 10.241±0.00 N/A N/A N/A N/A N/A N/A 23.079±7.13 36.178±0.00 30.611±0.93 3.325±0.00
ENSMUST00000080178 8.481±4.36 34.458±19.22 9.559±2.06 6.535±2.01 9.970±0.84 7.471±1.85 18.747±3.81 3.629±1.06 24.518±21.08 2.616±0.80 26.566±8.12 14.474±7.48 22.607±4.78 0.782±0.16
ENSMUST00000106241 5.961±0.82 14.895±0.29 N/A 1.401±0.00 8.192±1.11 9.140±2.68 N/A 2.593±0.61 2.410±0.80 2.892±0.00 N/A 10.631±2.33 6.879±0.32 N/A
ENSMUST00000106243 3.232±0.23 12.561±0.00 3.218±0.76 4.222±0.05 10.132±5.88 9.260±0.00 23.141±8.47 4.861±0.85 13.632±11.04 5.251±0.35 27.858±9.27 15.717±0.88 5.162±0.20 0.449±0.02
ENSMUST00000124991 11.833±0.54 41.242±9.70 N/A 14.227±0.42 27.305±4.91 31.873±5.46 53.966±4.38 9.904±2.64 30.202±51.31 8.575±0.31 N/A 46.525±12.67 N/A 1.478±0.00
ENSMUST00000146156 N/A N/A 5.650±0.00 N/A 6.535±0.00 N/A N/A N/A N/A N/A N/A 8.534±0.00 N/A N/A
ENSMUST00000183940 3.830±0.20 13.841±0.00 3.775±0.03 3.884±0.03 5.575±0.79 12.635±0.00 N/A 3.037±0.00 18.447±9.94 2.286±0.00 N/A 8.061±1.46 5.362±0.10 0.446±0.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059259 pabpc4 poly(A) binding protein, cytoplasmic 4 (inducible form) protein_coding Danio_rerio
ENSG00000090621 PABPC4 poly(A) binding protein, cytoplasmic 4 (inducible form) protein_coding Homo_sapiens

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