C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cyclin T1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000011960 Ccnt1 10090 - 15:98538689-98570923 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000012104 Ccnt1-201 98543211-98567636 protein_coding
  ENSMUST00000130921 Ccnt1-002 98558598-98567680 retained_intron
  ENSMUST00000163180 Ccnt1-004 98538699-98543020 processed_transcript
  ENSMUST00000164294 Ccnt1-006 98544567-98565139 retained_intron
  ENSMUST00000164565 Ccnt1-008 98548652-98567545 retained_intron
  ENSMUST00000168928 Ccnt1-003 98543211-98567636 nonsense_mediated_decay
  ENSMUST00000169674 Ccnt1-005 98544340-98547020 retained_intron
  ENSMUST00000169707 Ccnt1-001 98538689-98570923 protein_coding
  ENSMUST00000170452 Ccnt1-007 98544139-98554685 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000012104ENSMUST00000168928ENSMUST00000169674ENSMUST00000169707ENSMUST00000170452
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000012104 2.393±0.74 1.670±0.43 N/A N/A 3.081±0.65 2.437±0.66 1.537±0.29 2.115±0.45 1.585±0.10 3.434±0.98 N/A 2.811±0.44 5.986±0.00 4.335±0.42
ENSMUST00000168928 N/A N/A N/A N/A N/A 1.382±0.06 N/A N/A N/A N/A N/A N/A N/A 0.909±0.00
ENSMUST00000169674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.011±0.00
ENSMUST00000169707 2.115±1.19 1.820±0.15 5.280±0.11 3.712±0.23 1.755±0.97 1.419±0.66 1.682±0.63 0.957±0.43 1.487±0.54 3.062±1.90 1.890±0.63 2.370±2.23 4.149±2.57 1.244±0.52
ENSMUST00000170452 N/A 2.448±0.00 N/A N/A N/A 3.083±0.00 N/A N/A N/A 4.692±0.00 N/A 7.344±1.29 N/A 3.830±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00068F CIL_00068F_0002 CGP 15:98518821-98570923

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0003677 ISO DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006468 ISO protein phosphorylation
GO:0007049 IEA cell cycle
GO:0008024 ISS positive transcription elongation factor complex b
GO:0017069 IDA snRNA binding
GO:0019901 IEA protein kinase binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0051301 IEA cell division

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017525 ccnt1 cyclin T1 protein_coding Danio_rerio
ENSG00000129315 CCNT1 cyclin T1 protein_coding Homo_sapiens

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