C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ets variant 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000013089 Etv5 10090 - 16:22381309-22439719 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000079601 Etv5-001 22381309-22439719 protein_coding
  ENSMUST00000165506 Etv5-004 22401864-22439616 processed_transcript
  ENSMUST00000168774 Etv5-002 22381316-22436514 protein_coding
  ENSMUST00000170393 Etv5-003 22412924-22439570 protein_coding
  ENSMUST00000170803 Etv5-005 22383579-22401829 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079601ENSMUST00000168774ENSMUST00000170393ENSMUST00000170803
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079601 7.849±3.27 10.686±2.48 6.590±1.40 7.313±1.22 6.182±0.17 10.867±3.43 4.797±0.78 8.850±0.47 1.957±0.80 56.208±5.43 3.257±0.30 4.059±1.73 4.179±4.11 5.017±2.40
ENSMUST00000168774 N/A 6.669±0.27 N/A N/A N/A 5.796±2.40 N/A N/A 0.618±0.45 N/A N/A 1.756±0.54 0.672±0.31 0.378±0.00
ENSMUST00000170393 N/A N/A N/A 38.845±0.00 N/A N/A N/A N/A N/A N/A N/A 6.572±0.00 2.503±1.19 6.730±0.00
ENSMUST00000170803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.298±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZT CIL_0008ZT_0002 VISTA 16:21809929-22410861
CIL_0006RI CIL_0006RI_0002 CGP 16:22244549-22439719
CIL_0006RL CIL_0006RL_0002 CGP 16:22381309-22657221

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005634 IBA:ISS nucleus
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0007274 IMP neuromuscular synaptic transmission
GO:0007626 IMP locomotory behavior
GO:0030154 IBA cell differentiation
GO:0034599 ISS cellular response to oxidative stress
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 ISS transcription regulatory region DNA binding
GO:0045666 IEA positive regulation of neuron differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048133 IEA male germ-line stem cell asymmetric division
GO:0050807 IMP regulation of synapse organization
GO:0060252 IEA positive regulation of glial cell proliferation
GO:0060762 IDA regulation of branching involved in mammary gland duct morphogenesis
GO:0071340 IMP skeletal muscle acetylcholine-gated channel clustering

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044511 etv5b ets variant 5b protein_coding Danio_rerio
ENSDARG00000069763 etv5a ets variant 5a protein_coding Danio_rerio
ENSG00000244405 ETV5 ets variant 5 protein_coding Homo_sapiens

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