C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mediator complex subunit 16
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000013833 Med16 10090 - 10:79894708-79908923 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000105378 Med16-001 79894708-79908921 protein_coding
  ENSMUST00000163125 Med16-002 79901838-79908818 retained_intron
  ENSMUST00000164705 Med16-005 79903179-79908910 protein_coding
  ENSMUST00000165684 Med16-003 79894935-79908898 protein_coding
  ENSMUST00000166964 Med16-006 79903355-79908321 protein_coding
  ENSMUST00000170375 Med16-007 79898236-79899685 retained_intron
  ENSMUST00000170409 Med16-004 79903382-79908923 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105378ENSMUST00000163125ENSMUST00000165684
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105378 8.420±2.04 8.615±4.36 3.843±0.08 5.343±1.21 10.362±2.54 10.532±5.55 6.792±0.97 10.840±2.48 4.261±2.06 11.995±5.05 1.899±0.66 20.862±7.60 3.259±0.56 16.547±9.51
ENSMUST00000163125 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.397±0.00
ENSMUST00000165684 11.550±2.73 12.187±5.02 12.876±0.82 8.266±3.25 9.235±5.90 12.027±3.75 11.753±2.12 11.972±1.52 6.670±2.16 8.706±0.87 5.651±0.96 14.411±6.09 6.514±3.67 23.726±13.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_0000HX CIL_0000HX_0002 CGP 10:79890853-79908923
CIL_00011Z CIL_00011Z_0002 CGP 10:79894708-79917006

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003712 IEA transcription cofactor activity
GO:0003824 IEA catalytic activity
GO:0004872 ISS receptor activity
GO:0005654 TAS nucleoplasm
GO:0006366 IC transcription from RNA polymerase II promoter
GO:0006367 ISS transcription initiation from RNA polymerase II promoter
GO:0016020 IEA membrane
GO:0016592 IDA:ISS mediator complex
GO:0030375 ISS thyroid hormone receptor coactivator activity
GO:0030518 IEA intracellular steroid hormone receptor signaling pathway
GO:0030521 ISS androgen receptor signaling pathway
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046966 ISS thyroid hormone receptor binding
GO:2000273 IEA positive regulation of receptor activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040779 med16 mediator complex subunit 16 protein_coding Danio_rerio
ENSG00000175221 MED16 mediator complex subunit 16 protein_coding Homo_sapiens

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