C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: paired box 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000014030 Pax5 10090 - 4:44531145-44710487 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000014174 Pax5-001 44531145-44710487 protein_coding
  ENSMUST00000102932 Pax5-004 44531145-44710418 protein_coding
  ENSMUST00000107825 Pax5-003 44531145-44710418 protein_coding
  ENSMUST00000107826 Pax5-006 44531145-44710418 protein_coding
  ENSMUST00000107827 Pax5-005 44531145-44710418 protein_coding
  ENSMUST00000134968 Pax5-010 44531497-44710408 protein_coding
  ENSMUST00000143235 Pax5-002 44531145-44710418 nonsense_mediated_decay
  ENSMUST00000146335 Pax5-007 44679440-44704006 protein_coding
  ENSMUST00000165417 Pax5-009 44531497-44710408 protein_coding
  ENSMUST00000172866 Pax5-016 44531497-44710408 protein_coding
  ENSMUST00000172949 Pax5-008 44569971-44683815 processed_transcript
  ENSMUST00000173733 Pax5-014 44531497-44710408 protein_coding
  ENSMUST00000173821 Pax5-011 44531497-44710408 protein_coding
  ENSMUST00000174242 Pax5-013 44531497-44710408 nonsense_mediated_decay
  ENSMUST00000174319 Pax5-012 44531497-44710408 protein_coding
  ENSMUST00000174761 Pax5-017 44679454-44703413 processed_transcript
  ENSMUST00000186542 Pax5-019 44679454-44703413 protein_coding
  ENSMUST00000187197 Pax5-015 44679454-44703413 processed_transcript
  ENSMUST00000191036 Pax5-018 44679454-44703413 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000014174ENSMUST00000102932ENSMUST00000107825ENSMUST00000107826ENSMUST00000107827ENSMUST00000134968ENSMUST00000143235ENSMUST00000146335ENSMUST00000165417ENSMUST00000172866ENSMUST00000172949ENSMUST00000173733ENSMUST00000173821ENSMUST00000174242ENSMUST00000187197ENSMUST00000191036
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000014174 0.033±0.01 0.194±0.09 N/A N/A 5.334±3.22 0.446±0.18 0.040±0.00 0.287±0.02 0.105±0.07 1.302±0.31 0.471±0.00 0.080±0.01 0.075±0.05 8.924±2.27
ENSMUST00000102932 0.046±0.00 N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A N/A N/A N/A
ENSMUST00000107825 N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A
ENSMUST00000107826 N/A N/A 0.017±0.00 N/A N/A N/A 0.023±0.00 0.023±0.00 N/A N/A N/A 0.067±0.00 0.042±0.00 N/A
ENSMUST00000107827 0.062±0.00 N/A 0.003±0.00 N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A 0.147±0.09 N/A N/A
ENSMUST00000134968 N/A N/A N/A N/A N/A 0.478±0.06 N/A N/A 0.041±0.00 N/A N/A N/A N/A N/A
ENSMUST00000143235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.088±0.00 N/A N/A
ENSMUST00000146335 N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.02 N/A N/A N/A N/A N/A
ENSMUST00000165417 0.056±0.00 0.075±0.00 N/A N/A N/A N/A 0.026±0.00 0.050±0.00 0.106±0.05 N/A N/A 0.069±0.03 0.020±0.00 N/A
ENSMUST00000172866 0.052±0.00 0.161±0.00 N/A N/A 6.627±2.00 0.590±0.44 0.201±0.13 N/A 0.183±0.09 1.109±0.21 N/A N/A 0.019±0.00 N/A
ENSMUST00000172949 N/A N/A N/A N/A N/A N/A 0.099±0.00 N/A N/A N/A 0.279±0.00 0.143±0.01 N/A N/A
ENSMUST00000173733 N/A N/A N/A 0.188±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173821 N/A N/A N/A N/A N/A 0.585±0.00 0.124±0.00 N/A N/A N/A 1.099±0.00 N/A N/A N/A
ENSMUST00000174242 N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187197 N/A 0.836±0.00 N/A N/A N/A N/A N/A N/A 0.128±0.00 N/A N/A 0.701±0.33 N/A N/A
ENSMUST00000191036 1.085±0.00 N/A N/A 0.628±0.00 N/A N/A N/A N/A 0.543±0.00 N/A N/A N/A 0.107±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K6 CIL_0006K6_0002 CGP 4:44300876-44710487
CIL_000843 CIL_000843_0002 VISTA 4:44530265-45131018
CIL_0006K7 CIL_0006K7_0002 CGP 4:44531145-44932215

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 TAS transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007283 IEA spermatogenesis
GO:0007399 IEA nervous system development
GO:0009887 TAS organ morphogenesis
GO:0035914 IMP skeletal muscle cell differentiation
GO:0045892 TAS negative regulation of transcription, DNA-templated
GO:0045893 TAS positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051573 IMP negative regulation of histone H3-K9 methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037383 pax5 paired box gene 5 protein_coding Danio_rerio
ENSG00000196092 PAX5 paired box 5 protein_coding Homo_sapiens

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