C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GLIS family zinc finger 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000014303 Glis2 10090 + 16:4594713-4624924 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000014447 Glis2-001 4594713-4615957 protein_coding
  ENSMUST00000122896 Glis2-002 4608627-4615942 retained_intron
  ENSMUST00000127120 Glis2-005 4611628-4624924 processed_transcript
  ENSMUST00000135577 Glis2-004 4611410-4613656 retained_intron
  ENSMUST00000141682 Glis2-003 4601163-4610413 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000014447ENSMUST00000122896
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000014447 13.252±5.65 8.675±0.67 17.512±1.04 9.172±6.54 7.915±1.67 6.048±0.23 5.572±0.11 68.365±5.95 1.603±0.98 26.016±2.10 1.229±0.11 16.375±12.45 6.218±3.00
ENSMUST00000122896 N/A 2.926±0.38 N/A 2.309±0.53 2.052±0.06 1.601±0.00 N/A N/A N/A 6.949±0.64 N/A 3.976±1.57 1.920±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WQ CIL_0000WQ_0002 CGP 16:4544661-4624924
CIL_00009U CIL_00009U_0002 CGP 16:4594713-4624988

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 ISS transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 ISS regulation of transcription from RNA polymerase II promoter
GO:0007399 IEA nervous system development
GO:0016607 IDA nuclear speck
GO:0030154 IEA cell differentiation
GO:0043433 IDA negative regulation of sequence-specific DNA binding transcription factor activity
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045879 IMP negative regulation of smoothened signaling pathway
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073861 OTTDARG00000032278 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000078388 GLIS2 (2 of 2) GLIS family zinc finger 2 protein_coding Danio_rerio
ENSG00000126603 GLIS2 GLIS family zinc finger 2 protein_coding Homo_sapiens

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