C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000016344 Ppdpf 10090 + 2:181187247-181188771 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000016488 Ppdpf-001 181187247-181188771 protein_coding
  ENSMUST00000108841 Ppdpf-004 181187336-181188504 protein_coding
  ENSMUST00000127971 Ppdpf-002 181187296-181188741 retained_intron
  ENSMUST00000135011 Ppdpf-006 181187914-181188504 retained_intron
  ENSMUST00000138800 Ppdpf-005 181187536-181188504 retained_intron
  ENSMUST00000146089 Ppdpf-003 181187347-181188504 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016488ENSMUST00000108841ENSMUST00000127971ENSMUST00000135011ENSMUST00000138800ENSMUST00000146089
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016488 10.148±1.39 17.993±4.03 15.854±2.62 18.539±0.00 11.494±6.58 24.625±6.95 4.191±1.07 13.874±2.56 15.305±6.24 14.072±2.05 4.746±1.60 13.489±5.96 8.077±0.12 0.708±0.31
ENSMUST00000108841 25.225±4.29 30.398±6.56 32.639±7.94 38.953±6.57 38.870±1.87 44.387±4.52 14.117±1.54 35.608±1.23 33.170±13.22 29.317±1.63 21.659±4.11 18.551±4.77 18.500±8.71 1.745±0.53
ENSMUST00000127971 N/A N/A N/A 12.384±5.81 6.618±0.06 N/A N/A N/A 4.052±0.78 N/A N/A 4.440±0.96 N/A 0.555±0.00
ENSMUST00000135011 15.064±2.25 N/A N/A 5.308±0.00 20.360±0.00 N/A 6.551±0.00 N/A N/A N/A N/A 40.997±17.72 44.914±14.98 0.666±0.00
ENSMUST00000138800 N/A 6.972±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 7.640±1.44 5.188±0.48 17.728±7.34 N/A
ENSMUST00000146089 12.463±1.35 15.044±3.20 17.853±3.22 48.490±6.64 19.384±2.53 17.673±3.05 5.898±0.90 11.096±1.60 10.716±2.15 12.541±2.46 9.053±2.24 9.637±2.02 8.250±0.59 0.790±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045F CIL_00045F_0002 CGP 2:181147653-181188771
CIL_0005ZJ CIL_0005ZJ_0003 CGP 2:181187247-181202789

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0007275 IEA multicellular organismal development
GO:0008150 ND biological_process
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007682 ppdpfa pancreatic progenitor cell differentiation and proliferation factor a protein_coding Danio_rerio
ENSDARG00000031317 ppdpfb pancreatic progenitor cell differentiation and proliferation factor b protein_coding Danio_rerio
ENSG00000125534 PPDPF pancreatic progenitor cell differentiation and proliferation factor protein_coding Homo_sapiens

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