C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine/arginine-rich splicing factor 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000016921 Srsf6 10090 + 2:162931528-162937121 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000017065 Srsf6-002 162931562-162935026 processed_transcript
  ENSMUST00000126163 Srsf6-003 162931661-162933509 processed_transcript
  ENSMUST00000130411 Srsf6-001 162931528-162937121 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017065ENSMUST00000130411
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017065 25.385±10.14 N/A 64.212±18.95 57.687±10.48 22.156±2.66 N/A 15.051±3.30 13.540±4.06 47.866±11.48 14.374±4.16 13.922±1.88 126.831±77.85 95.230±68.49 28.946±6.28
ENSMUST00000130411 21.414±9.32 403.551±147.17 24.102±10.39 48.992±34.19 41.499±23.85 39.146±3.54 7.550±2.52 20.868±8.58 31.363±16.07 24.333±2.93 3.077±0.27 132.928±96.82 16.972±8.94 9.279±3.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004E4 CIL_0004E4_0002 CGP 2:161521990-162937121
CIL_00044L CIL_00044L_0002 CGP 2:162931528-162974522

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000380 ISS alternative mRNA splicing, via spliceosome
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0003723 ISS RNA binding
GO:0005634 IEA nucleus
GO:0006376 ISS mRNA splice site selection
GO:0010837 ISS regulation of keratinocyte proliferation
GO:0016607 ISS nuclear speck
GO:0036002 ISS pre-mRNA binding
GO:0044822 IEA poly(A) RNA binding
GO:0045617 ISS negative regulation of keratinocyte differentiation
GO:0048025 IEA negative regulation of mRNA splicing, via spliceosome
GO:0060501 ISO positive regulation of epithelial cell proliferation involved in lung morphogenesis
GO:0060548 ISO negative regulation of cell death
GO:0061041 ISS regulation of wound healing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013729 srsf6a serine/arginine-rich splicing factor 6a protein_coding Danio_rerio
ENSDARG00000016783 srsf6b serine/arginine-rich splicing factor 6b protein_coding Danio_rerio
ENSG00000124193 SRSF6 serine/arginine-rich splicing factor 6 protein_coding Homo_sapiens

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