C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 35, member C2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000017664 Slc35c2 10090 - 2:165276554-165287869 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000017808 Slc35c2-008 165276554-165287827 protein_coding
  ENSMUST00000109298 Slc35c2-014 165276554-165287755 protein_coding
  ENSMUST00000109299 Slc35c2-013 165276554-165287755 protein_coding
  ENSMUST00000109300 Slc35c2-012 165276554-165287869 protein_coding
  ENSMUST00000125550 Slc35c2-015 165276554-165277841 retained_intron
  ENSMUST00000129210 Slc35c2-002 165280874-165286552 protein_coding
  ENSMUST00000129336 Slc35c2-005 165278354-165283368 protein_coding
  ENSMUST00000130393 Slc35c2-001 165282879-165287772 protein_coding
  ENSMUST00000131409 Slc35c2-016 165280879-165287827 protein_coding
  ENSMUST00000132270 Slc35c2-004 165276554-165287824 nonsense_mediated_decay
  ENSMUST00000133961 Slc35c2-009 165280786-165287836 protein_coding
  ENSMUST00000145301 Slc35c2-006 165278390-165283600 nonsense_mediated_decay
  ENSMUST00000147247 Slc35c2-011 165281549-165287838 retained_intron
  ENSMUST00000154608 Slc35c2-007 165277452-165282223 retained_intron
  ENSMUST00000155289 Slc35c2-003 165280617-165283600 protein_coding
  ENSMUST00000156134 Slc35c2-010 165280786-165287835 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017808ENSMUST00000109298ENSMUST00000109299ENSMUST00000109300ENSMUST00000125550ENSMUST00000129210ENSMUST00000133961ENSMUST00000147247ENSMUST00000154608ENSMUST00000156134
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017808 5.210±0.00 N/A 5.012±0.00 2.937±0.00 6.423±0.00 2.691±0.00 4.661±2.77 7.512±3.41 5.021±0.77 5.353±1.83 N/A 5.306±3.07 5.934±0.56 5.920±2.46
ENSMUST00000109298 6.559±0.17 9.541±2.88 N/A 1.272±0.00 N/A 4.683±0.67 N/A N/A 3.741±0.61 3.781±0.00 N/A 3.216±1.01 5.044±2.86 N/A
ENSMUST00000109299 N/A N/A N/A 6.431±0.00 N/A N/A 1.588±0.00 N/A N/A N/A N/A 4.797±2.28 6.367±5.54 N/A
ENSMUST00000109300 10.588±0.57 18.675±2.79 9.168±0.55 10.801±2.04 14.819±7.34 9.076±1.79 4.623±0.40 9.504±0.99 9.737±3.65 8.535±0.75 4.510±1.35 10.869±1.90 11.639±1.08 8.856±1.15
ENSMUST00000125550 N/A N/A N/A 4.318±0.00 N/A N/A N/A N/A N/A N/A N/A 6.613±0.00 N/A N/A
ENSMUST00000129210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.842±0.00 N/A N/A
ENSMUST00000133961 N/A 19.297±2.72 N/A N/A 14.119±1.85 8.212±1.51 N/A 7.196±0.59 6.205±0.56 8.855±1.56 N/A 14.813±0.00 N/A 8.116±0.43
ENSMUST00000147247 N/A N/A N/A N/A 1.359±0.00 N/A N/A N/A N/A N/A N/A 3.193±1.68 N/A N/A
ENSMUST00000154608 N/A N/A N/A N/A 8.469±0.00 N/A N/A N/A N/A N/A N/A 5.120±0.77 N/A N/A
ENSMUST00000156134 N/A N/A N/A N/A N/A 11.128±1.25 N/A N/A 18.770±0.00 N/A N/A 11.236±1.24 N/A 8.220±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BF CIL_0007BF_0002 CGP 2:165111507-165287869
CIL_0006G4 CIL_0006G4_0002 CGP 2:165276554-165326479

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005793 ISO endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0005801 ISO cis-Golgi network
GO:0006810 IEA transport
GO:0010629 IDA negative regulation of gene expression
GO:0016021 IEA integral component of membrane
GO:0036065 IDA fucosylation
GO:0036066 IDA protein O-linked fucosylation
GO:0045747 IDA positive regulation of Notch signaling pathway
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000080189 SLC35C2 solute carrier family 35 (GDP-fucose transporter), member C2 protein_coding Homo_sapiens

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