C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytohesin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018001 Cyth3 10090 + 5:143622447-143710250 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000110727 Cyth3-002 143651241-143708256 protein_coding
  ENSMUST00000116456 Cyth3-001 143622447-143710250 protein_coding
  ENSMUST00000131436 Cyth3-003 143634066-143692652 protein_coding
  ENSMUST00000177196 Cyth3-004 143622534-143686526 protein_coding
  ENSMUST00000177281 Cyth3-005 143636351-143692554 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110727ENSMUST00000116456ENSMUST00000131436ENSMUST00000177281
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110727 N/A N/A N/A N/A N/A 3.073±0.00 N/A N/A 0.253±0.00 N/A N/A N/A N/A 4.991±1.93
ENSMUST00000116456 7.412±4.27 64.119±4.68 18.273±0.03 9.211±3.11 10.660±6.35 9.940±3.21 10.381±2.44 4.939±3.06 9.312±9.48 89.497±3.61 2.477±0.78 17.622±9.48 18.712±3.27 3.217±0.54
ENSMUST00000131436 N/A N/A N/A 42.699±0.00 N/A N/A N/A N/A N/A N/A N/A 64.466±0.00 78.128±11.94 N/A
ENSMUST00000177281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 37.093±0.00 92.964±0.00 54.534±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006RJ CIL_0006RJ_0002 CGP 5:143622447-143732280

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001726 IPI ruffle
GO:0005085 ISS guanyl-nucleotide exchange factor activity
GO:0005086 IBA ARF guanyl-nucleotide exchange factor activity
GO:0005515 IPI protein binding
GO:0005547 IDA phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 IDA cytoplasm
GO:0005829 ISS cytosol
GO:0005886 IDA plasma membrane
GO:0031234 ISS extrinsic component of cytoplasmic side of plasma membrane
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0045785 IDA positive regulation of cell adhesion
GO:0048193 ISS Golgi vesicle transport
GO:0090162 IMP establishment of epithelial cell polarity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005159 CYTH3 (1 of 3) cytohesin 3 protein_coding Danio_rerio
ENSDARG00000007807 cyth3a cytohesin 3a protein_coding Danio_rerio
ENSDARG00000089829 CYTH3 (3 of 3) cytohesin 3 protein_coding Danio_rerio
ENSG00000008256 CYTH3 cytohesin 3 protein_coding Homo_sapiens

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