C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: COP9 (constitutive photomorphogenic) homolog, subunit 6 (Arabidopsis thaliana)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019494 Cops6 10090 + 5:138161071-138164646 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019638 Cops6-001 138161071-138164646 protein_coding
  ENSMUST00000110951 Cops6-002 138161100-138163978 protein_coding
  ENSMUST00000127881 Cops6-004 138161109-138162384 retained_intron
  ENSMUST00000132639 Cops6-005 138162777-138163919 protein_coding
  ENSMUST00000154867 Cops6-003 138161169-138164139 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019638ENSMUST00000110951ENSMUST00000127881
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.512±0.77 N/A N/A N/A
ENSMUST00000110951 77.431±8.79 65.141±6.30 60.701±7.09 82.649±4.29 76.253±17.95 48.025±5.07 64.973±8.45 79.707±14.43 89.789±21.34 39.976±4.49 54.553±3.94 80.203±13.06 92.037±18.57 116.456±9.61
ENSMUST00000127881 N/A N/A N/A N/A N/A 80.977±0.00 N/A 72.479±0.00 69.885±12.05 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0002GB CIL_0002GB_0002 CGP 5:138139702-138164646
CIL_0003E2 CIL_0003E2_0002 CGP 5:138161071-138172422

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008180 IDA COP9 signalosome
GO:0010388 IEA cullin deneddylation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079173 COPS6 COP9 signalosome subunit 6 protein_coding Danio_rerio
ENSG00000168090 COPS6 COP9 signalosome subunit 6 protein_coding Homo_sapiens

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