C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: reticulon 4 interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019864 Rtn4ip1 10090 + 10:43901807-43947862 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000054418 Rtn4ip1-001 43901807-43947862 protein_coding
  ENSMUST00000105492 Rtn4ip1-002 43921035-43947862 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054418ENSMUST00000105492
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054418 5.343±0.58 3.120±0.35 4.821±0.02 3.817±1.63 5.607±1.79 3.633±1.73 19.769±4.10 12.141±0.80 5.458±1.38 2.840±0.77 6.853±0.87 2.194±0.85 2.960±1.10 3.326±0.00
ENSMUST00000105492 2.259±0.67 3.137±0.51 N/A 1.342±0.00 3.329±1.66 2.628±0.69 6.074±1.44 4.643±0.81 2.749±1.64 1.430±0.00 N/A 2.007±0.81 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085F CIL_00085F_0002 VISTA 10:43422435-44024831
CIL_0008PN CIL_0008PN_0002 VISTA 10:43446138-44046678

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005739 ISO mitochondrion
GO:0008270 IEA zinc ion binding
GO:0016491 IEA oxidoreductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031366 rtn4ip1 reticulon 4 interacting protein 1 protein_coding Danio_rerio
ENSG00000130347 RTN4IP1 reticulon 4 interacting protein 1 protein_coding Homo_sapiens

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