C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: suppressor of var1, 3-like 1 (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020079 Supv3l1 10090 - 10:62429209-62449738 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020273 Supv3l1-001 62429209-62449738 protein_coding
  ENSMUST00000159042 Supv3l1-004 62429443-62430968 retained_intron
  ENSMUST00000161830 Supv3l1-005 62429340-62430621 retained_intron
  ENSMUST00000161941 Supv3l1-003 62432359-62433127 processed_transcript
  ENSMUST00000162023 Supv3l1-002 62429255-62449683 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020273ENSMUST00000159042ENSMUST00000162023
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020273 3.318±1.03 3.613±1.60 2.127±0.01 6.443±3.64 3.303±0.55 2.828±0.75 8.365±2.51 5.746±0.89 4.595±2.39 1.076±0.42 4.429±0.84 3.647±1.29 7.765±3.82 4.169±1.95
ENSMUST00000159042 N/A N/A N/A 1.059±0.00 N/A N/A N/A N/A 3.178±0.00 N/A N/A 5.542±0.51 N/A N/A
ENSMUST00000162023 3.299±0.71 2.816±1.09 1.718±0.25 2.039±1.03 1.942±0.68 1.199±0.23 2.181±0.27 2.564±0.68 1.830±0.59 2.078±0.32 0.882±0.03 2.453±0.97 3.885±2.58 1.947±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TI CIL_0007TI_0002 VISTA 10:61828052-62430842
CIL_00002A CIL_00002A_0002 CGP 10:62383137-62449738

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000958 ISS mitochondrial mRNA catabolic process
GO:0000962 ISS positive regulation of mitochondrial RNA catabolic process
GO:0000965 ISS mitochondrial RNA 3'-end processing
GO:0003677 ISS DNA binding
GO:0003678 ISS DNA helicase activity
GO:0003725 ISS double-stranded RNA binding
GO:0004004 ISS ATP-dependent RNA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005739 IDA mitochondrion
GO:0005759 ISS mitochondrial matrix
GO:0006200 IEA ATP catabolic process
GO:0006310 ISS DNA recombination
GO:0006401 ISS RNA catabolic process
GO:0030307 ISS positive regulation of cell growth
GO:0032508 ISS DNA duplex unwinding
GO:0034458 ISS 3'-5' RNA helicase activity
GO:0035945 ISS mitochondrial ncRNA surveillance
GO:0035946 ISS mitochondrial mRNA surveillance
GO:0042645 IEA mitochondrial nucleoid
GO:0042803 IEA protein homodimerization activity
GO:0043066 ISS negative regulation of apoptotic process
GO:0044822 IEA poly(A) RNA binding
GO:0045025 ISS mitochondrial degradosome
GO:0070584 ISS mitochondrion morphogenesis
GO:0070827 ISS chromatin maintenance
GO:2000827 ISS mitochondrial RNA surveillance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077728 supv3l1 suppressor of var1, 3-like 1 (S. cerevisiae) protein_coding Danio_rerio
ENSG00000156502 SUPV3L1 suppressor of var1, 3-like 1 (S. cerevisiae) protein_coding Homo_sapiens

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