C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mucosal vascular addressin cell adhesion molecule 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020310 Madcam1 10090 + 10:79664574-79668536 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020554 Madcam1-201 79664574-79668536 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020554
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020554 0.125±0.02 0.091±0.04 0.006±0.00 0.217±0.02 1.290±0.76 1.151±0.80 0.102±0.07 0.094±0.07 0.034±0.02 0.145±0.12 0.138±0.08 0.419±0.52 0.194±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_0007EJ CIL_0007EJ_0002 CGP 10:79639526-79668536
CIL_00043J CIL_00043J_0002 CGP 10:79664574-79676126

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002687 IEA positive regulation of leukocyte migration
GO:0007160 IEA cell-matrix adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007568 IEA aging
GO:0016020 IEA membrane
GO:0030216 IMP keratinocyte differentiation
GO:0034113 IEA heterotypic cell-cell adhesion
GO:0043113 IEA receptor clustering
GO:0050900 IMP leukocyte migration
GO:0050901 IEA leukocyte tethering or rolling
GO:0098640 IEA integrin binding involved in cell-matrix adhesion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000099866 MADCAM1 mucosal vascular addressin cell adhesion molecule 1 protein_coding Homo_sapiens

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