C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) mitochondrial (DNA directed)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020329 Polrmt 10090 - 10:79736123-79746581 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020580 Polrmt-001 79736130-79746579 protein_coding
  ENSMUST00000159016 Polrmt-002 79736130-79746581 protein_coding
  ENSMUST00000159082 Polrmt-003 79736128-79746573 retained_intron
  ENSMUST00000159289 Polrmt-011 79736172-79736768 retained_intron
  ENSMUST00000160595 Polrmt-008 79736129-79736783 processed_transcript
  ENSMUST00000160838 Polrmt-013 79736207-79737686 retained_intron
  ENSMUST00000161098 Polrmt-010 79736173-79737713 retained_intron
  ENSMUST00000161375 Polrmt-007 79743667-79746573 processed_transcript
  ENSMUST00000161662 Polrmt-009 79736127-79739374 protein_coding
  ENSMUST00000161765 Polrmt-004 79736123-79746573 retained_intron
  ENSMUST00000162679 Polrmt-012 79738088-79739375 retained_intron
  ENSMUST00000162687 Polrmt-006 79736577-79738631 retained_intron
  ENSMUST00000162694 Polrmt-005 79736174-79746571 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020580ENSMUST00000159016ENSMUST00000159082ENSMUST00000160595ENSMUST00000161098ENSMUST00000161662ENSMUST00000161765ENSMUST00000162679ENSMUST00000162694
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020580 11.494±0.97 17.857±3.77 7.263±0.45 8.213±4.81 14.838±2.88 16.066±1.75 9.289±0.95 14.220±2.70 7.152±1.40 10.434±0.75 6.675±0.70 14.685±7.25 5.358±2.96 6.348±0.91
ENSMUST00000159016 N/A N/A N/A 6.845±0.00 0.268±0.00 N/A N/A N/A N/A N/A N/A 2.421±0.76 2.280±0.00 1.558±0.00
ENSMUST00000159082 N/A 2.952±0.62 N/A 3.183±0.00 0.252±0.00 N/A N/A N/A 1.905±0.00 2.536±0.00 1.597±0.00 2.765±1.01 N/A N/A
ENSMUST00000160595 N/A N/A N/A N/A 5.598±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161098 N/A N/A N/A N/A 1.354±0.00 N/A N/A N/A N/A N/A N/A 6.524±0.00 5.532±0.00 2.546±0.00
ENSMUST00000161662 N/A N/A N/A N/A 1.550±0.00 N/A N/A 7.034±0.00 N/A N/A 4.432±0.00 N/A N/A N/A
ENSMUST00000161765 2.001±0.00 N/A N/A 1.343±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162679 N/A N/A N/A 12.153±0.00 N/A N/A N/A N/A N/A N/A N/A 12.079±0.00 9.160±0.02 3.186±0.00
ENSMUST00000162694 N/A N/A N/A N/A N/A 2.313±0.00 N/A N/A N/A N/A N/A 1.867±0.00 1.637±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_0005ZK CIL_0005ZK_0003 CGP 10:79716634-79746581
CIL_0005ZL CIL_0005ZL_0003 CGP 10:79736123-79756961

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0042645 IEA mitochondrial nucleoid
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061658 POLRMT polymerase (RNA) mitochondrial (DNA directed) protein_coding Danio_rerio
ENSG00000099821 POLRMT polymerase (RNA) mitochondrial (DNA directed) protein_coding Homo_sapiens

Loading