C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: smoothelin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020439 Smtn 10090 - 11:3517523-3540612 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020718 Smtn-002 3517523-3527937 protein_coding
  ENSMUST00000020721 Smtn-001 3517523-3539292 protein_coding
  ENSMUST00000075118 Smtn-003 3517523-3539239 protein_coding
  ENSMUST00000110011 Smtn-009 3517523-3537398 protein_coding
  ENSMUST00000136243 Smtn-006 3532603-3539251 protein_coding
  ENSMUST00000144635 Smtn-005 3520538-3522554 processed_transcript
  ENSMUST00000151804 Smtn-007 3534814-3539249 processed_transcript
  ENSMUST00000154861 Smtn-004 3517523-3539252 processed_transcript
  ENSMUST00000156201 Smtn-008 3532460-3540612 protein_coding
  ENSMUST00000170588 Smtn-201 3517523-3539292 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020718ENSMUST00000020721ENSMUST00000075118ENSMUST00000110011ENSMUST00000154861ENSMUST00000156201
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020718 N/A N/A N/A N/A 6.526±0.62 N/A N/A N/A N/A 31.257±6.02 N/A N/A N/A
ENSMUST00000020721 4.829±0.81 2.493±0.95 N/A 2.638±0.17 3.090±0.75 N/A 8.892±2.45 1.406±0.92 5.093±1.38 4.830±0.41 6.709±1.11 43.564±19.45 0.965±0.00
ENSMUST00000075118 18.229±11.63 2.648±0.77 340.804±0.00 1.752±0.00 2.292±0.28 19.844±9.53 2.814±0.17 0.413±0.03 3.652±0.87 N/A 12.833±7.52 21.511±2.15 0.887±0.29
ENSMUST00000110011 N/A N/A N/A N/A 1.513±0.00 N/A N/A 0.256±0.00 N/A N/A N/A N/A N/A
ENSMUST00000154861 N/A N/A N/A N/A N/A N/A N/A 0.926±0.00 N/A N/A N/A N/A N/A
ENSMUST00000156201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.397±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NL CIL_0000NL_0002 CGP 11:3514684-3540612

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0015629 IEA actin cytoskeleton

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059442 smtnb smoothelin b protein_coding Danio_rerio
ENSG00000183963 SMTN smoothelin protein_coding Homo_sapiens

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