C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif-containing 47
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020773 Trim47 10090 - 11:116105752-116127210 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021120 Trim47-002 116105752-116110246 protein_coding
  ENSMUST00000106441 Trim47-001 116105752-116110237 protein_coding
  ENSMUST00000127235 Trim47-005 116106339-116107740 processed_transcript
  ENSMUST00000133039 Trim47-007 116107811-116127210 processed_transcript
  ENSMUST00000134691 Trim47-004 116106392-116108035 processed_transcript
  ENSMUST00000141531 Trim47-003 116105752-116108119 processed_transcript
  ENSMUST00000149957 Trim47-006 116106209-116107083 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021120ENSMUST00000106441ENSMUST00000127235ENSMUST00000133039ENSMUST00000134691ENSMUST00000141531
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021120 9.343±1.29 8.095±4.01 7.122±0.16 0.563±0.08 9.140±1.84 8.035±2.19 3.626±0.21 5.631±2.04 1.349±0.58 8.990±1.28 1.813±0.68 15.169±2.20 2.077±0.14 1.567±0.61
ENSMUST00000106441 8.972±2.86 10.542±3.25 12.441±1.65 1.541±0.71 12.526±2.16 8.240±1.68 4.725±1.41 6.352±0.87 1.803±0.96 10.497±1.08 2.257±0.93 8.592±2.52 3.129±1.21 1.062±0.34
ENSMUST00000127235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.191±0.00 N/A
ENSMUST00000133039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.595±0.00
ENSMUST00000134691 N/A N/A N/A 1.366±0.00 N/A N/A N/A N/A N/A N/A N/A 6.538±0.00 2.902±0.00 1.501±0.00
ENSMUST00000141531 N/A N/A N/A N/A N/A N/A 2.414±0.00 4.194±0.89 N/A N/A 1.778±0.40 7.736±2.85 1.346±0.00 0.787±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0002 VISTA 11:116019003-116619995
CIL_00078U CIL_00078U_0002 CGP 11:116078573-116127210
CIL_00078V CIL_00078V_0002 CGP 11:116105752-116131128

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003909 ftr01 finTRIM family, member 1 protein_coding Danio_rerio
ENSDARG00000005327 ftr66 finTRIM family, member 66 protein_coding Danio_rerio
ENSDARG00000008396 ftr24 finTRIM family, member 24 protein_coding Danio_rerio
ENSDARG00000009161 ftr55 finTRIM family, member 55 protein_coding Danio_rerio
ENSDARG00000018506 ftr03 finTRIM family, member 3 protein_coding Danio_rerio
ENSDARG00000020863 trim25l tripartite motif-containing 25-like protein_coding Danio_rerio
ENSDARG00000023597 ftr64 finTRIM family, member 64 protein_coding Danio_rerio
ENSDARG00000025403 ftr83 finTRIM family, member 83 protein_coding Danio_rerio
ENSDARG00000026704 ftr72 finTRIM family, member 72 protein_coding Danio_rerio
ENSDARG00000029105 ftr51 finTRIM family, member 51 protein_coding Danio_rerio
ENSDARG00000030954 ftr56 finTRIM family, member 56 protein_coding Danio_rerio
ENSDARG00000031565 ftr67 finTRIM family, member 67 protein_coding Danio_rerio
ENSDARG00000032043 ftr16 finTRIM family, member 16 protein_coding Danio_rerio
ENSDARG00000034707 TRIM47 (15 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000035339 TRIM47 (16 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000037190 TRIM47 (17 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000038646 ftr11 finTRIM family, member 11 protein_coding Danio_rerio
ENSDARG00000038747 TRIM47 (19 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000039852 TRIM47 (20 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000040536 TRIM47 (21 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000041220 ftr53 finTRIM family, member 53 protein_coding Danio_rerio
ENSDARG00000043850 ftr54 finTRIM family, member 54 protein_coding Danio_rerio
ENSDARG00000052564 ftr42 finTRIM family, member 42 protein_coding Danio_rerio
ENSDARG00000052955 ftr19 finTRIM family, member 19 protein_coding Danio_rerio
ENSDARG00000052971 ftr19 finTRIM family, member 19 protein_coding Danio_rerio
ENSDARG00000053293 ftr14 finTRIM family, member 14 protein_coding Danio_rerio
ENSDARG00000053366 ftr12 finTRIM family, member 12 protein_coding Danio_rerio
ENSDARG00000053450 ftr06 finTRIM family, member 6 protein_coding Danio_rerio
ENSDARG00000054153 ftr50 finTRIM family, member 50 protein_coding Danio_rerio
ENSDARG00000055436 TRIM47 (33 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000055476 CR352329.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000055520 ftr61 finTRIM family, member 61 protein_coding Danio_rerio
ENSDARG00000055647 ftr82 finTRIM family, member 82 protein_coding Danio_rerio
ENSDARG00000067661 TRIM47 (37 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000067872 TRIM47 (38 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000067985 ftr23 finTRIM family, member 23 protein_coding Danio_rerio
ENSDARG00000067986 TRIM47 (40 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000069508 ftr46 finTRIM family, member 46 protein_coding Danio_rerio
ENSDARG00000069512 CABZ01034857.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000069514 TRIM47 (43 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000070943 TRIM47 (44 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000071238 ftr58 finTRIM family, member 58 protein_coding Danio_rerio
ENSDARG00000073735 TRIM47 (46 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000073880 ftr41 finTRIM family, member 41 protein_coding Danio_rerio
ENSDARG00000074118 ftr15 finTRIM family, member 15 protein_coding Danio_rerio
ENSDARG00000074360 ftr57 finTRIM family, member 57 protein_coding Danio_rerio
ENSDARG00000074884 CABZ01034858.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000075355 ftr35 finTRIM family, member 35 protein_coding Danio_rerio
ENSDARG00000076093 ftr76 finTRIM family, member 76 protein_coding Danio_rerio
ENSDARG00000076106 ftr43 finTRIM family, member 43 protein_coding Danio_rerio
ENSDARG00000076839 TRIM47 (55 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000076969 ftr22 finTRIM family, member 22 protein_coding Danio_rerio
ENSDARG00000077412 ftr08 finTRIM family, member 8 protein_coding Danio_rerio
ENSDARG00000078065 TRIM47 (58 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000078254 ftr14l finTRIM family, member 14-like protein_coding Danio_rerio
ENSDARG00000078446 ftr07 finTRIM family, member 7 protein_coding Danio_rerio
ENSDARG00000079412 ftr02 finTRIM family, member 2 protein_coding Danio_rerio
ENSDARG00000079537 ftr13 finTRIM family, member 13 protein_coding Danio_rerio
ENSDARG00000079614 ftr38 finTRIM family, member 38 protein_coding Danio_rerio
ENSDARG00000079913 TRIM47 (64 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000087057 ftr34 finTRIM family, member 34 protein_coding Danio_rerio
ENSDARG00000087711 TRIM47 (67 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000088280 ftr28l finTRIM family, member 28-like protein_coding Danio_rerio
ENSDARG00000089388 ftr37 finTRIM family, member 37 protein_coding Danio_rerio
ENSDARG00000090431 ftr65 finTRIM family, member 65 protein_coding Danio_rerio
ENSDARG00000092023 ftr10 finTRIM family, member 10 protein_coding Danio_rerio
ENSDARG00000092745 ftr29 finTRIM family, member 29 protein_coding Danio_rerio
ENSDARG00000092961 ftr26 finTRIM family, member 26 protein_coding Danio_rerio
ENSDARG00000093203 ftr32 finTRIM family, member 32 protein_coding Danio_rerio
ENSDARG00000093263 TRIM47 (75 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000093651 ftr26 finTRIM family, member 26 protein_coding Danio_rerio
ENSDARG00000093932 ftr04 finTRIM family, member 4 protein_coding Danio_rerio
ENSDARG00000093972 ftr79 finTRIM family, member 79 protein_coding Danio_rerio
ENSDARG00000094131 ftr27 finTRIM family, member 27 protein_coding Danio_rerio
ENSDARG00000095032 ftr33 finTRIM family, member 33 protein_coding Danio_rerio
ENSDARG00000095083 ftr05 finTRIM family, member 5 protein_coding Danio_rerio
ENSDARG00000095298 ftr73 finTRIM family, member 73 protein_coding Danio_rerio
ENSDARG00000095345 ftr09 finTRIM family, member 9 protein_coding Danio_rerio
ENSDARG00000095448 ftr30 finTRIM family, member 30 protein_coding Danio_rerio
ENSDARG00000095678 ftr36 finTRIM family, member 36 protein_coding Danio_rerio
ENSDARG00000095825 tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000095864 ftr59 finTRIM family, member 59 protein_coding Danio_rerio
ENSDARG00000097373 TRIM47 (87 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000097464 TRIM47 (88 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000097679 TRIM47 (89 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSDARG00000098004 TRIM47 (90 of 90) tripartite motif containing 47 protein_coding Danio_rerio
ENSG00000132481 TRIM47 tripartite motif containing 47 protein_coding Homo_sapiens

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