C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020876 Snx11 10090 - 11:96767555-96777559 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021246 Snx11-002 96767555-96777531 protein_coding
  ENSMUST00000107661 Snx11-001 96767877-96777559 protein_coding
  ENSMUST00000125025 Snx11-006 96770098-96771050 processed_transcript
  ENSMUST00000127375 Snx11-003 96769891-96777492 protein_coding
  ENSMUST00000132354 Snx11-005 96772537-96774641 processed_transcript
  ENSMUST00000136799 Snx11-004 96776300-96777520 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021246ENSMUST00000107661ENSMUST00000127375ENSMUST00000136799
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021246 2.413±0.22 1.698±0.36 3.228±0.10 5.111±0.57 2.051±0.54 3.185±1.05 1.176±0.10 1.751±0.55 1.822±0.73 3.954±1.15 2.092±0.66 2.428±0.77 1.718±0.68 3.057±0.69
ENSMUST00000107661 8.108±2.80 6.374±2.17 7.500±1.19 10.919±5.91 5.720±2.14 5.792±1.90 2.674±0.37 4.192±0.81 3.858±1.73 8.849±1.12 3.981±0.79 6.781±2.17 4.074±2.37 4.065±0.65
ENSMUST00000127375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.619±0.78 N/A
ENSMUST00000136799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.189±0.19 4.827±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097B CIL_00097B_0002 VISTA 11:96441475-97042608
CIL_0007WA CIL_0007WA_0002 VISTA 11:96526222-97127190
CIL_0007RQ CIL_0007RQ_0002 VISTA 11:96583318-97187851

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005768 ISS endosome
GO:0006886 IBA intracellular protein transport
GO:0016020 IEA membrane
GO:0016050 ISS vesicle organization
GO:0035091 IBA phosphatidylinositol binding
GO:1901981 ISS phosphatidylinositol phosphate binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052522 snx11 sorting nexin 11 protein_coding Danio_rerio
ENSG00000002919 SNX11 sorting nexin 11 protein_coding Homo_sapiens

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