C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: general transcription factor II A, 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020962 Gtf2a1 10090 - 12:91555916-91590487 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021345 Gtf2a1-001 91555916-91590009 protein_coding
  ENSMUST00000063314 Gtf2a1-002 91558688-91590487 protein_coding
  ENSMUST00000163693 Gtf2a1-003 91586625-91589639 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021345ENSMUST00000063314ENSMUST00000163693
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021345 7.396±3.41 7.039±0.75 3.262±0.26 5.441±2.95 6.000±2.30 5.130±1.49 3.845±0.67 8.092±0.54 4.854±1.51 11.118±0.42 0.567±0.24 13.128±7.12 3.693±1.78 6.449±2.59
ENSMUST00000063314 N/A 6.884±1.81 N/A N/A 4.015±0.52 3.096±0.54 N/A N/A 1.856±0.33 N/A N/A 8.894±4.20 3.885±0.00 6.066±3.32
ENSMUST00000163693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 102.100±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087I CIL_00087I_0002 VISTA 12:91377577-91981083
CIL_0004TT CIL_0004TT_0002 CGP 12:91400994-91590487
CIL_0004TS CIL_0004TS_0002 CGP 12:91555916-91788387

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001103 IPI RNA polymerase II repressing transcription factor binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005672 IDA transcription factor TFIIA complex
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 IEA transcription initiation from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011000 gtf2a1 general transcription factor IIA, 1 protein_coding Danio_rerio
ENSG00000165417 GTF2A1 general transcription factor IIA, 1, 19/37kDa protein_coding Homo_sapiens

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