C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calmin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021097 Clmn 10090 - 12:104763114-104865076 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000109936 Clmn-201 104763114-104865076 protein_coding
  ENSMUST00000109937 Clmn-202 104763114-104865076 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109936ENSMUST00000109937
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109936 2.416±0.54 0.603±0.08 1.684±0.41 2.050±2.34 1.890±0.55 9.503±2.42 0.151±0.09 8.683±0.75 2.939±2.70 1.306±0.21 0.214±0.08 1.757±0.68 0.702±0.34 2.953±0.00
ENSMUST00000109937 0.841±0.43 0.459±0.09 0.457±0.00 0.100±0.00 1.259±0.58 3.067±0.82 0.171±0.10 1.495±0.12 0.771±0.86 0.625±0.07 0.285±0.16 1.138±0.59 0.213±0.11 7.403±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085I CIL_00085I_0002 VISTA 12:104600832-105202741
CIL_00099M CIL_00099M_0002 VISTA 12:104639330-105240069
CIL_0008Z4 CIL_0008Z4_0002 VISTA 12:104639392-105239908
CIL_0003QP CIL_0003QP_0002 CGP 12:104687742-104865076

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003779 IEA actin binding
GO:0005737 IDA cytoplasm
GO:0008285 IDA negative regulation of cell proliferation
GO:0016020 ISS membrane
GO:0016021 IEA integral component of membrane
GO:0031175 IMP neuron projection development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043667 calmin (calponin-like, transmembrane) protein_coding Danio_rerio
ENSDARG00000068624 SYNE1 calmin (calponin-like, transmembrane) protein_coding Danio_rerio
ENSDARG00000096867 CLMN calmin (calponin-like, transmembrane) protein_coding Danio_rerio
ENSG00000165959 CLMN calmin (calponin-like, transmembrane) protein_coding Homo_sapiens

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