C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small EDRK-rich factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021643 Serf1 10090 + 13:100107997-100114571 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022145 Serf1-001 100108012-100114238 protein_coding
  ENSMUST00000129014 Serf1-006 100108155-100114571 protein_coding
  ENSMUST00000132053 Serf1-002 100108085-100111009 protein_coding
  ENSMUST00000142155 Serf1-003 100107997-100114233 protein_coding
  ENSMUST00000151821 Serf1-004 100108341-100114238 protein_coding
  ENSMUST00000152286 Serf1-005 100108396-100114231 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022145ENSMUST00000132053ENSMUST00000142155ENSMUST00000151821ENSMUST00000152286
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022145 5.630±0.71 20.429±3.98 14.008±0.45 75.803±11.39 3.792±1.29 9.627±1.97 1.955±0.75 6.906±0.90 6.737±2.34 3.402±0.91 2.661±1.04 10.546±4.74 7.147±4.25 519.287±95.20
ENSMUST00000132053 N/A N/A N/A N/A N/A N/A 0.458±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142155 N/A N/A N/A 10.164±0.00 N/A N/A N/A N/A N/A N/A 4.309±1.34 36.861±0.00 8.062±4.88 544.741±0.00
ENSMUST00000151821 N/A N/A N/A N/A 1.412±0.00 N/A N/A N/A N/A N/A N/A 2.827±0.00 N/A N/A
ENSMUST00000152286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 60.337±0.24 14.830±5.91 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZD CIL_0004ZD_0003 CGP 13:100107997-100137690

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074340 serf2 small EDRK-rich factor 2 protein_coding Danio_rerio
ENSDARG00000075881 si:ch211-39k3.2 si:ch211-39k3.2 protein_coding Danio_rerio
ENSG00000172058 SERF1A small EDRK-rich factor 1A (telomeric) protein_coding Homo_sapiens
ENSG00000205572 SERF1B small EDRK-rich factor 1B (centromeric) protein_coding Homo_sapiens

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