C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ADP-ribosylation factor 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021877 Arf4 10090 + 14:26638074-26665084 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022429 Arf4-001 26638074-26657258 protein_coding
  ENSMUST00000112318 Arf4-002 26638347-26656814 protein_coding
  ENSMUST00000166075 Arf4-003 26638226-26656801 nonsense_mediated_decay
  ENSMUST00000167376 Arf4-005 26653131-26665084 nonsense_mediated_decay
  ENSMUST00000171207 Arf4-006 26653011-26653857 retained_intron
  ENSMUST00000171282 Arf4-004 26638253-26656808 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022429ENSMUST00000112318ENSMUST00000166075ENSMUST00000171282
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022429 80.069±48.30 301.199±81.80 66.214±10.63 54.803±44.99 134.091±123.28 273.498±42.42 25.944±9.42 55.280±35.17 49.538±31.21 70.439±31.86 2.665±0.55 107.890±102.19 51.802±41.37 49.838±31.10
ENSMUST00000112318 N/A N/A N/A 25.267±0.00 38.753±0.00 N/A N/A N/A 23.349±1.33 N/A N/A 48.601±4.73 N/A N/A
ENSMUST00000166075 44.824±0.00 N/A 33.088±0.00 15.860±0.00 21.381±0.00 N/A 8.343±0.00 N/A 23.545±7.96 N/A 5.792±0.91 36.829±17.52 76.555±26.65 27.034±5.29
ENSMUST00000171282 N/A N/A N/A N/A N/A N/A N/A N/A 20.265±0.00 N/A 3.200±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00074S CIL_00074S_0002 CGP 14:26638074-26669883

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005154 IEA epidermal growth factor receptor binding
GO:0005515 IPI protein binding
GO:0005525 TAS GTP binding
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005829 IEA cytosol
GO:0005886 IDA plasma membrane
GO:0006471 IEA protein ADP-ribosylation
GO:0007173 IEA epidermal growth factor receptor signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007420 IEA brain development
GO:0015031 TAS protein transport
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0016477 IEA cell migration
GO:0031584 IEA activation of phospholipase D activity
GO:0032587 IEA ruffle membrane
GO:0043066 IEA negative regulation of apoptotic process
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048678 IEA response to axon injury
GO:0070062 IEA extracellular vesicular exosome
GO:2000377 IEA regulation of reactive oxygen species metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042382 ARF5 (1 of 2) ADP-ribosylation factor 4 protein_coding Danio_rerio
ENSDARG00000045989 arf4a ADP-ribosylation factor 4a protein_coding Danio_rerio
ENSDARG00000070472 arf5 ADP-ribosylation factor 5 protein_coding Danio_rerio
ENSG00000168374 ARF4 ADP-ribosylation factor 4 protein_coding Homo_sapiens

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