C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: apolipoprotein D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022548 Apod 10090 - 16:31296192-31314808 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023207 Apod-003 31297156-31314594 retained_intron
  ENSMUST00000115230 Apod-002 31297122-31314804 protein_coding
  ENSMUST00000130560 Apod-001 31296192-31314808 protein_coding
  ENSMUST00000145837 Apod-004 31303505-31311348 retained_intron
  ENSMUST00000155682 Apod-005 31297513-31303678 retained_intron
  ENSMUST00000156456 Apod-006 31297420-31303445 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023207ENSMUST00000115230ENSMUST00000130560ENSMUST00000145837ENSMUST00000155682
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023207 1.111±0.56 0.226±0.00 9.693±2.44 15.519±16.63 6.862±2.19 0.683±0.41 0.627±0.21 0.403±0.22 0.055±0.04 1.349±0.42 11.692±2.10 0.751±0.56 0.690±1.10 0.299±0.17
ENSMUST00000115230 0.926±0.22 0.342±0.15 7.939±0.70 4.589±0.94 4.884±0.84 0.603±0.52 0.894±0.31 0.385±0.10 0.073±0.03 0.544±0.17 8.251±1.45 0.536±0.55 0.564±0.46 0.090±0.00
ENSMUST00000130560 1.054±0.24 0.507±0.25 3.190±0.04 2.296±0.01 7.071±0.93 0.349±0.19 0.693±0.09 0.253±0.15 0.015±0.00 0.892±0.17 2.522±0.47 0.346±0.14 0.042±0.00 0.250±0.27
ENSMUST00000145837 N/A N/A N/A N/A N/A 0.411±0.00 N/A N/A N/A N/A N/A 0.343±0.00 N/A 0.248±0.00
ENSMUST00000155682 N/A N/A N/A 46.888±0.00 N/A 0.392±0.07 N/A 0.419±0.00 0.037±0.02 N/A N/A 1.197±0.29 1.674±0.00 0.316±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CD CIL_0006CD_0002 CGP 16:31251537-31314808

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000302 IMP response to reactive oxygen species
GO:0005215 IEA transporter activity
GO:0005515 IEA protein binding
GO:0005615 ISS extracellular space
GO:0005622 IDA intracellular
GO:0005783 ISS endoplasmic reticulum
GO:0006006 ISS glucose metabolic process
GO:0006629 ISS lipid metabolic process
GO:0006810 IEA transport
GO:0007420 ISS brain development
GO:0007568 ISS aging
GO:0010642 ISS negative regulation of platelet-derived growth factor receptor signaling pathway
GO:0014012 ISS peripheral nervous system axon regeneration
GO:0015485 ISS cholesterol binding
GO:0022626 ISS cytosolic ribosome
GO:0030425 ISS dendrite
GO:0042246 ISS tissue regeneration
GO:0042308 ISS negative regulation of protein import into nucleus
GO:0042493 ISS response to drug
GO:0043025 ISS neuronal cell body
GO:0048471 ISS perinuclear region of cytoplasm
GO:0048662 ISS negative regulation of smooth muscle cell proliferation
GO:0048678 ISS response to axon injury
GO:0051895 ISS negative regulation of focal adhesion assembly
GO:0060588 IMP negative regulation of lipoprotein lipid oxidation
GO:0070062 IEA extracellular vesicular exosome
GO:0071638 ISS negative regulation of monocyte chemotactic protein-1 production
GO:1900016 ISS negative regulation of cytokine production involved in inflammatory response
GO:2000098 ISS negative regulation of smooth muscle cell-matrix adhesion
GO:2000405 ISS negative regulation of T cell migration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057437 APOD (1 of 3) apolipoprotein D protein_coding Danio_rerio
ENSDARG00000060345 apod apolipoprotein D protein_coding Danio_rerio
ENSDARG00000060350 APOD (3 of 3) apolipoprotein D protein_coding Danio_rerio
ENSG00000189058 APOD apolipoprotein D protein_coding Homo_sapiens

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