C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lymphocyte antigen 6 complex, locus H
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022577 Ly6h 10090 - 15:75551268-75567255 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023241 Ly6h-002 75564747-75566657 protein_coding
  ENSMUST00000065417 Ly6h-201 75564745-75566856 protein_coding
  ENSMUST00000126129 Ly6h-006 75553045-75566648 nonsense_mediated_decay
  ENSMUST00000127095 Ly6h-001 75564744-75567255 protein_coding
  ENSMUST00000150125 Ly6h-004 75565213-75566632 retained_intron
  ENSMUST00000156032 Ly6h-005 75565026-75567216 protein_coding
  ENSMUST00000163116 Ly6h-202 75551268-75566648 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023241ENSMUST00000065417ENSMUST00000126129ENSMUST00000127095ENSMUST00000150125ENSMUST00000156032ENSMUST00000163116
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023241 6.040±0.61 3.532±0.40 0.088±0.04 79.703±21.90 2.204±0.81 0.271±0.06 0.038±0.01 0.063±0.02 0.167±0.10 0.141±0.04 0.178±0.00 4.354±2.64 0.117±0.06 0.037±0.00
ENSMUST00000065417 2.852±1.17 N/A N/A N/A 0.915±0.00 0.361±0.02 N/A N/A 0.037±0.00 N/A N/A 2.698±0.53 0.161±0.03 N/A
ENSMUST00000126129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 0.083±0.03
ENSMUST00000127095 2.646±1.33 0.461±0.09 0.054±0.01 74.318±11.36 0.634±0.27 0.227±0.11 N/A 0.087±0.00 0.185±0.23 0.040±0.00 0.076±0.00 4.306±1.05 0.115±0.05 N/A
ENSMUST00000150125 2.704±0.28 N/A N/A 62.613±13.26 0.651±0.37 0.284±0.00 N/A 0.041±0.00 0.213±0.18 0.075±0.01 0.110±0.02 2.176±1.92 0.168±0.00 0.042±0.00
ENSMUST00000156032 N/A 2.145±0.43 N/A 281.514±0.00 1.287±0.66 0.420±0.08 N/A 0.066±0.01 0.148±0.04 0.235±0.02 0.389±0.00 6.423±4.10 0.558±0.66 N/A
ENSMUST00000163116 N/A N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A N/A N/A 0.052±0.00 N/A 0.099±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NV CIL_0002NV_0002 CGP 15:75449457-75567255
CIL_0008C2 CIL_0008C2_0002 VISTA 15:75534812-76135772
CIL_0002NW CIL_0002NW_0002 CGP 15:75551268-75599481

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0031225 IEA anchored component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000176956 LY6H lymphocyte antigen 6 complex, locus H protein_coding Homo_sapiens

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