C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: rhophilin, Rho GTPase binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022580 Rhpn1 10090 + 15:75704280-75714410 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023244 Rhpn1-002 75704394-75714225 protein_coding
  ENSMUST00000121137 Rhpn1-001 75704280-75714408 protein_coding
  ENSMUST00000124749 Rhpn1-003 75704308-75714410 retained_intron
  ENSMUST00000143056 Rhpn1-004 75704318-75714405 retained_intron
  ENSMUST00000149407 Rhpn1-005 75704329-75714408 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023244ENSMUST00000121137ENSMUST00000124749ENSMUST00000143056ENSMUST00000149407
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023244 N/A 0.255±0.01 N/A 2.043±0.00 0.143±0.00 0.110±0.03 0.029±0.00 N/A 0.017±0.00 N/A 0.063±0.02 0.697±0.31 1.349±0.00 2.938±0.00
ENSMUST00000121137 0.383±0.27 0.236±0.08 0.166±0.05 5.641±1.37 0.297±0.08 0.145±0.02 0.059±0.00 11.018±1.85 0.089±0.08 1.000±0.22 0.056±0.00 2.320±0.90 1.168±0.40 11.113±1.84
ENSMUST00000124749 0.098±0.06 0.141±0.07 0.183±0.00 3.849±1.03 0.157±0.11 0.045±0.02 0.044±0.00 2.806±1.12 0.029±0.01 0.288±0.06 N/A 0.683±0.19 0.411±0.12 1.517±0.00
ENSMUST00000143056 0.054±0.00 N/A N/A N/A 0.065±0.01 0.046±0.01 0.026±0.00 1.574±0.00 0.021±0.01 N/A 0.063±0.03 0.551±0.17 0.451±0.06 0.599±0.00
ENSMUST00000149407 0.061±0.00 0.146±0.02 N/A N/A 0.084±0.00 0.135±0.00 0.062±0.03 1.604±0.11 0.022±0.00 N/A N/A 0.368±0.17 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008C2 CIL_0008C2_0002 VISTA 15:75534812-76135772
CIL_0001NH CIL_0001NH_0002 CGP 15:75657035-75714410
CIL_0001NI CIL_0001NI_0002 CGP 15:75704280-75747922

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005083 IPI small GTPase regulator activity
GO:0007165 IEA signal transduction
GO:0050790 IPI regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052454 rhpn1 rhophilin, Rho GTPase binding protein 1 protein_coding Danio_rerio
ENSG00000158106 RHPN1 rhophilin, Rho GTPase binding protein 1 protein_coding Homo_sapiens

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