C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: basigin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023175 Bsg 10090 + 10:79704491-79711969 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067036 Bsg-001 79704500-79711895 protein_coding
  ENSMUST00000105381 Bsg-006 79709598-79711969 protein_coding
  ENSMUST00000178383 Bsg-005 79704570-79711823 protein_coding
  ENSMUST00000179201 Bsg-004 79704508-79710728 processed_transcript
  ENSMUST00000179781 Bsg-002 79704491-79711969 protein_coding
  ENSMUST00000180235 Bsg-003 79710105-79711710 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067036ENSMUST00000105381ENSMUST00000178383ENSMUST00000179201ENSMUST00000179781
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067036 N/A 27.115±6.74 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000105381 N/A N/A N/A N/A 27.648±0.00 N/A N/A N/A N/A N/A N/A 246.717±25.67 N/A N/A
ENSMUST00000178383 N/A N/A N/A 293.634±0.00 N/A N/A N/A N/A N/A N/A N/A 299.593±0.00 993.451±336.76 173.777±0.00
ENSMUST00000179201 184.027±40.89 209.272±82.87 N/A 101.498±3.39 174.059±34.42 287.568±64.06 263.923±42.89 221.277±0.00 227.405±0.00 204.644±31.38 N/A 279.363±143.16 566.111±0.00 57.835±0.00
ENSMUST00000179781 247.932±33.03 140.498±29.63 274.396±17.09 165.726±81.03 188.648±46.95 544.507±46.18 545.545±72.00 390.905±32.36 419.187±106.68 289.047±15.91 297.828±13.23 309.638±121.86 521.326±287.08 353.952±162.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_00008J CIL_00008J_0002 CGP 10:79689020-79711969
CIL_00008I CIL_00008I_0002 CGP 10:79704491-79736108

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002080 IDA acrosomal membrane
GO:0005537 IEA mannose binding
GO:0005739 IEA mitochondrion
GO:0005886 IEA plasma membrane
GO:0005887 ISS integral component of plasma membrane
GO:0005925 IEA focal adhesion
GO:0007566 IEA embryo implantation
GO:0016020 IEA membrane
GO:0042383 IEA sarcolemma
GO:0042475 IEA odontogenesis of dentin-containing tooth
GO:0043434 IEA response to peptide hormone
GO:0045121 IEA membrane raft
GO:0046689 IEA response to mercury ion
GO:0046697 IEA decidualization
GO:0051591 IEA response to cAMP
GO:0070062 IEA extracellular vesicular exosome
GO:0072661 ISS protein targeting to plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000172270 BSG basigin (Ok blood group) protein_coding Homo_sapiens

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