C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mitochondrial ribosomal protein S18A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023967 Mrps18a 10090 + 17:46110986-46128910 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000024763 Mrps18a-001 46110986-46128910 protein_coding
  ENSMUST00000123646 Mrps18a-004 46110996-46125865 protein_coding
  ENSMUST00000131943 Mrps18a-003 46110995-46123127 retained_intron
  ENSMUST00000134237 Mrps18a-005 46122803-46128870 processed_transcript
  ENSMUST00000146255 Mrps18a-006 46125458-46128793 retained_intron
  ENSMUST00000147672 Mrps18a-002 46125275-46127723 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024763ENSMUST00000123646ENSMUST00000134237ENSMUST00000146255ENSMUST00000147672
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024763 25.436±1.18 13.982±1.12 35.593±1.57 27.516±3.43 16.950±5.04 19.294±4.18 41.086±6.56 48.743±4.58 26.511±6.71 17.173±1.58 44.327±2.28 19.854±9.61 36.364±14.18 35.175±11.51
ENSMUST00000123646 N/A N/A N/A N/A 5.513±0.00 N/A N/A N/A 6.559±0.00 N/A N/A N/A N/A N/A
ENSMUST00000134237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.170±0.23 N/A N/A
ENSMUST00000146255 N/A N/A N/A 10.549±0.00 7.952±0.00 N/A N/A N/A N/A N/A N/A 13.802±0.00 10.940±4.07 N/A
ENSMUST00000147672 1.830±0.77 1.390±0.19 N/A 1.544±0.16 2.008±0.37 1.420±0.20 N/A N/A N/A 1.908±0.04 N/A 2.158±0.47 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YI CIL_0008YI_0002 VISTA 17:45708824-46310190
CIL_00049T CIL_00049T_0002 CGP 17:46016993-46128910
CIL_0006UL CIL_0006UL_0002 CGP 17:46110986-46144216

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003735 IEA structural constituent of ribosome
GO:0005739 IDA mitochondrion
GO:0005763 IEA mitochondrial small ribosomal subunit
GO:0006412 IEA translation
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024465 mrps18a mitochondrial ribosomal protein S18A protein_coding Danio_rerio
ENSG00000096080 MRPS18A mitochondrial ribosomal protein S18A protein_coding Homo_sapiens

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