C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetratricopeptide repeat domain 39C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024424 Ttc39c 10090 + 18:12599926-12737050 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025294 Ttc39c-001 12643344-12737049 protein_coding
  ENSMUST00000141060 Ttc39c-002 12643344-12689445 retained_intron
  ENSMUST00000143388 Ttc39c-003 12734705-12736830 retained_intron
  ENSMUST00000169401 Ttc39c-004 12599926-12737050 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025294ENSMUST00000141060ENSMUST00000143388ENSMUST00000169401
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025294 4.160±0.80 8.792±4.70 0.909±0.27 2.720±0.44 2.877±1.24 0.667±0.24 0.370±0.10 3.425±1.06 8.842±6.94 1.011±0.31 0.414±0.16 4.559±2.92 0.752±0.36 6.458±3.29
ENSMUST00000141060 N/A N/A N/A N/A N/A 0.124±0.04 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143388 N/A N/A N/A N/A N/A N/A 1.301±0.00 N/A N/A 1.823±0.00 N/A N/A 1.724±0.46 N/A
ENSMUST00000169401 2.902±1.49 N/A 1.839±0.14 4.304±2.23 2.369±1.15 N/A 0.641±0.04 2.880±0.21 2.679±1.97 0.803±0.31 0.359±0.09 6.031±2.19 2.023±1.09 10.692±1.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005WU CIL_0005WU_0002 CGP 18:12333819-12737050
CIL_0005WT CIL_0005WT_0002 CGP 18:12599926-12755146

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010191 ttc39c tetratricopeptide repeat domain 39C protein_coding Danio_rerio
ENSG00000168234 TTC39C tetratricopeptide repeat domain 39C protein_coding Homo_sapiens

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