C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024935 Slc1a1 10090 + 19:28835049-28913960 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025875 Slc1a1-001 28835074-28913960 protein_coding
  ENSMUST00000160702 Slc1a1-003 28893013-28911877 retained_intron
  ENSMUST00000161119 Slc1a1-002 28835135-28905992 retained_intron
  ENSMUST00000161340 Slc1a1-005 28835049-28879301 retained_intron
  ENSMUST00000162189 Slc1a1-004 28895793-28912638 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLungMuscleOvaryPlacentaENSMUST00000025875ENSMUST00000161340
Transcript ID Adipose Bladder Brain Colon Heart Kidney Lung Muscle Ovary Placenta
ENSMUST00000025875 2.719±0.98 1.054±0.00 4.776±2.68 N/A 0.703±0.09 19.107±6.27 2.474±0.18 0.548±0.18 1.777±0.73 3.674±2.74
ENSMUST00000161340 N/A N/A N/A 15.023±0.00 N/A N/A N/A N/A 9.960±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NI CIL_0000NI_0002 CGP 19:28258851-28913960
CIL_0000NJ CIL_0000NJ_0002 CGP 19:28835049-28967800

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005313 IDA L-glutamate transmembrane transporter activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0015501 IDA glutamate:sodium symporter activity
GO:0015813 IDA L-glutamate transport
GO:0016021 IEA integral component of membrane
GO:0016595 IEA glutamate binding
GO:0017153 IEA sodium:dicarboxylate symporter activity
GO:0051260 IPI protein homooligomerization
GO:0051938 IEA L-glutamate import
GO:0055085 IEA transmembrane transport
GO:0070062 IEA extracellular vesicular exosome
GO:0070779 IEA D-aspartate import

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020212 slc1a1 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 protein_coding Danio_rerio
ENSG00000106688 SLC1A1 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 protein_coding Homo_sapiens

Loading