C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ER lipid raft associated 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025198 Erlin1 10090 - 19:44034944-44069785 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000071698 Erlin1-201 44034944-44069775 protein_coding
  ENSMUST00000112028 Erlin1-001 44034944-44069785 protein_coding
  ENSMUST00000168602 Erlin1-005 44067473-44069696 retained_intron
  ENSMUST00000169092 Erlin1-006 44069316-44069690 protein_coding
  ENSMUST00000170577 Erlin1-003 44066072-44069744 retained_intron
  ENSMUST00000170801 Erlin1-002 44034944-44069526 protein_coding
  ENSMUST00000171952 Erlin1-007 44059051-44069395 nonsense_mediated_decay
  ENSMUST00000172041 Erlin1-004 44056151-44069756 protein_coding
  ENSMUST00000172262 Erlin1-008 44059053-44067683 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071698ENSMUST00000112028ENSMUST00000168602ENSMUST00000170577ENSMUST00000170801ENSMUST00000172041
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071698 N/A 1.501±0.54 2.035±0.94 1.194±0.17 0.775±0.00 1.627±0.00 0.298±0.02 3.054±0.21 1.864±0.27 N/A N/A 1.363±0.42 3.720±1.12 5.414±1.80
ENSMUST00000112028 7.688±0.88 2.343±1.00 8.843±1.45 5.177±3.45 5.025±0.98 8.356±1.94 1.679±0.27 13.041±2.49 10.529±2.25 6.103±0.77 1.159±0.26 5.004±2.09 15.931±7.75 4.817±1.54
ENSMUST00000168602 N/A 2.807±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170577 N/A 0.651±0.05 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.973±0.31 N/A N/A
ENSMUST00000170801 N/A 0.597±0.00 N/A 1.746±0.88 0.913±0.00 N/A N/A 1.929±0.04 0.965±0.00 N/A 0.449±0.15 2.044±0.58 2.803±0.88 1.425±0.00
ENSMUST00000172041 N/A 1.673±0.00 N/A N/A N/A 2.900±0.00 N/A N/A N/A N/A N/A 2.706±0.93 N/A 8.995±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005DZ CIL_0005DZ_0002 CGP 19:44034944-44107480

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005789 ISS endoplasmic reticulum membrane
GO:0016021 IEA integral component of membrane
GO:0030433 IEA ER-associated ubiquitin-dependent protein catabolic process
GO:0043234 ISO protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021991 erlin1 ER lipid raft associated 1 protein_coding Danio_rerio
ENSG00000107566 ERLIN1 ER lipid raft associated 1 protein_coding Homo_sapiens

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