C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 16
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025616 Usp16 10090 + 16:87454703-87483517 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026710 Usp16-001 87454703-87483517 protein_coding
  ENSMUST00000119504 Usp16-006 87454979-87483310 protein_coding
  ENSMUST00000131206 Usp16-003 87455043-87471024 retained_intron
  ENSMUST00000131356 Usp16-008 87454985-87462049 protein_coding
  ENSMUST00000135399 Usp16-007 87472854-87479913 retained_intron
  ENSMUST00000144759 Usp16-004 87455058-87483310 nonsense_mediated_decay
  ENSMUST00000144886 Usp16-002 87455027-87461566 retained_intron
  ENSMUST00000146386 Usp16-005 87473089-87479207 retained_intron
  ENSMUST00000149656 Usp16-009 87481438-87483180 retained_intron
  ENSMUST00000177275 Usp16-012 87482851-87483298 retained_intron
  ENSMUST00000177538 Usp16-011 87455049-87466346 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonLungMuscleOvaryPlacentaTestisENSMUST00000026710ENSMUST00000119504ENSMUST00000131206ENSMUST00000144759ENSMUST00000146386
Transcript ID Adipose Brain Breast Colon Lung Muscle Ovary Placenta Testis
ENSMUST00000026710 N/A N/A N/A N/A N/A 8.773±0.87 13.557±0.16 7.454±0.00 N/A
ENSMUST00000119504 N/A N/A N/A 3.116±0.25 N/A N/A N/A 10.605±0.00 17.683±10.67
ENSMUST00000131206 N/A 24.590±0.00 N/A N/A N/A N/A 38.215±0.00 23.701±0.00 78.050±0.00
ENSMUST00000144759 4.581±0.29 N/A 5.496±1.56 N/A 5.361±0.87 4.983±0.00 N/A N/A 12.816±2.22
ENSMUST00000146386 N/A N/A N/A N/A N/A N/A N/A N/A 138.720±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CH CIL_0003CH_0002 CGP 16:87433407-87483517
CIL_000313 CIL_000313_0002 CGP 16:87454703-87495873

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003713 ISS transcription coactivator activity
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007067 ISS mitotic nuclear division
GO:0008234 IEA cysteine-type peptidase activity
GO:0008270 ISS zinc ion binding
GO:0016578 ISS histone deubiquitination
GO:0035522 IMP monoubiquitinated histone H2A deubiquitination
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0042393 ISS histone binding
GO:0043130 ISS ubiquitin binding
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045901 ISS positive regulation of translational elongation
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0051289 ISS protein homotetramerization
GO:0070537 ISS histone H2A K63-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060633 usp16 ubiquitin specific protease 16 protein_coding Danio_rerio
ENSG00000156256 USP16 ubiquitin specific peptidase 16 protein_coding Homo_sapiens

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