C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 4833439L19 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025871 4833439L19Rik 10090 - 13:54551218-54565435 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026989 4833439L19Rik-001 54551218-54565435 protein_coding
  ENSMUST00000126295 4833439L19Rik-005 54561708-54565325 protein_coding
  ENSMUST00000132136 4833439L19Rik-009 54561693-54565356 protein_coding
  ENSMUST00000143144 4833439L19Rik-004 54556587-54565330 protein_coding
  ENSMUST00000143173 4833439L19Rik-008 54556194-54565291 retained_intron
  ENSMUST00000147318 4833439L19Rik-006 54561571-54565344 retained_intron
  ENSMUST00000150938 4833439L19Rik-007 54556368-54565338 retained_intron
  ENSMUST00000153065 4833439L19Rik-002 54551223-54565303 protein_coding
  ENSMUST00000153708 4833439L19Rik-003 54552396-54565333 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026989ENSMUST00000143144ENSMUST00000153065ENSMUST00000153708
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026989 33.432±4.91 52.791±21.60 28.758±3.29 33.662±0.72 18.768±4.85 44.385±4.66 8.639±1.24 203.174±30.44 16.919±3.57 36.637±3.77 11.895±1.62 30.187±13.53 9.823±7.13 20.440±9.48
ENSMUST00000143144 N/A 67.015±14.33 N/A N/A N/A 37.119±7.39 N/A N/A N/A N/A N/A 41.612±0.00 N/A N/A
ENSMUST00000153065 8.583±2.42 10.918±0.00 11.316±0.00 14.966±5.19 12.323±8.13 14.049±2.51 N/A 83.764±4.32 6.153±1.62 N/A N/A 9.560±2.15 7.134±3.40 0.984±0.00
ENSMUST00000153708 N/A N/A N/A 15.660±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0002 VISTA 13:54491283-55092527
CIL_0002DK CIL_0002DK_0002 CGP 13:54503779-54565435
CIL_0002DL CIL_0002DL_0002 CGP 13:54551218-54581128

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IDA cytoplasm
GO:0008150 ND biological_process
GO:0016491 IEA oxidoreductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003127 zgc:123105 zgc:123105 protein_coding Danio_rerio
ENSG00000122203 KIAA1191 KIAA1191 protein_coding Homo_sapiens

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