C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: raftlin family member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025978 Rftn2 10090 - 1:55170159-55226782 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027121 Rftn2-001 55170159-55226782 protein_coding
  ENSMUST00000114428 Rftn2-004 55201651-55226782 protein_coding
  ENSMUST00000132055 Rftn2-002 55171748-55226782 nonsense_mediated_decay
  ENSMUST00000133294 Rftn2-005 55203945-55206489 processed_transcript
  ENSMUST00000141107 Rftn2-003 55223942-55226782 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027121ENSMUST00000114428ENSMUST00000132055ENSMUST00000133294
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027121 1.925±0.75 2.208±0.00 3.012±1.26 3.023±0.71 1.379±0.00 1.290±0.48 0.586±0.04 0.903±0.20 0.172±0.06 1.015±0.17 0.317±0.09 2.386±0.68 0.395±0.19 1.261±0.00
ENSMUST00000114428 N/A N/A N/A N/A N/A 0.456±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132055 N/A N/A N/A 9.748±0.00 N/A N/A N/A N/A N/A N/A N/A 5.941±0.00 0.474±0.06 2.696±1.47
ENSMUST00000133294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.493±0.00 4.351±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X7 CIL_0007X7_0002 VISTA 1:54604981-55208576
CIL_00042C CIL_00042C_0003 CGP 1:55131231-55226782
CIL_0002KG CIL_0002KG_0002 CGP 1:55170159-55248470

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005886 IEA plasma membrane
GO:0033227 IMP dsRNA transport
GO:0043330 IMP response to exogenous dsRNA

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056078 rftn2 raftlin family member 2 protein_coding Danio_rerio
ENSG00000162944 RFTN2 raftlin family member 2 protein_coding Homo_sapiens

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