C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribulose-5-phosphate-3-epimerase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026005 Rpe 10090 + 1:66700831-66719805 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027157 Rpe-001 66700831-66719805 protein_coding
  ENSMUST00000113995 Rpe-002 66700831-66719805 protein_coding
  ENSMUST00000142920 Rpe-003 66700831-66719805 nonsense_mediated_decay
  ENSMUST00000151016 Rpe-004 66700831-66715194 nonsense_mediated_decay
  ENSMUST00000190404 Rpe-005 66700907-66718019 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027157ENSMUST00000113995ENSMUST00000151016ENSMUST00000190404
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027157 14.564±3.00 29.463±4.00 6.767±1.82 6.073±0.04 12.945±6.44 10.447±1.16 1.990±0.29 7.823±1.73 9.476±2.45 9.291±0.72 1.887±0.29 9.128±2.60 5.597±2.66 2.419±0.36
ENSMUST00000113995 3.925±0.71 7.843±0.58 N/A N/A 1.894±0.00 2.500±0.48 N/A N/A 2.563±0.05 N/A N/A 3.583±1.31 N/A N/A
ENSMUST00000151016 N/A 7.843±1.96 N/A N/A 6.226±0.09 2.829±0.82 N/A N/A N/A 4.882±0.36 N/A 5.185±1.39 N/A N/A
ENSMUST00000190404 N/A N/A N/A N/A 17.168±0.00 N/A N/A N/A 11.297±2.57 N/A N/A N/A 10.033±4.32 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006P1 CIL_0006P1_0002 CGP 1:66468367-66719805
CIL_0006P6 CIL_0006P6_0002 CGP 1:66700831-66817562

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004750 ISS ribulose-phosphate 3-epimerase activity
GO:0005975 ISS carbohydrate metabolic process
GO:0006098 ISS pentose-phosphate shunt
GO:0009052 IEA pentose-phosphate shunt, non-oxidative branch
GO:0016857 IEA racemase and epimerase activity, acting on carbohydrates and derivatives
GO:0030246 IEA carbohydrate binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0046872 ISS metal ion binding
GO:0048029 IEA monosaccharide binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005251 rpe ribulose-5-phosphate-3-epimerase protein_coding Danio_rerio
ENSG00000197713 RPE ribulose-5-phosphate-3-epimerase protein_coding Homo_sapiens
ENSG00000235376 RPEL1 ribulose-5-phosphate-3-epimerase-like 1 protein_coding Homo_sapiens

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