C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026014 Raph1 10090 - 1:60482292-60567104 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027168 Raph1-201 60483236-60566765 protein_coding
  ENSMUST00000090293 Raph1-003 60490676-60566769 protein_coding
  ENSMUST00000127573 Raph1-007 60513809-60522291 retained_intron
  ENSMUST00000140485 Raph1-001 60482292-60566779 protein_coding
  ENSMUST00000142258 Raph1-004 60525688-60567104 protein_coding
  ENSMUST00000182085 Raph1-005 60483185-60499550 protein_coding
  ENSMUST00000188511 Raph1-002 60493323-60496281 retained_intron
  ENSMUST00000189383 Raph1-006 60501603-60503265 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027168ENSMUST00000090293ENSMUST00000140485ENSMUST00000182085
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027168 N/A N/A N/A N/A N/A N/A N/A N/A 4.660±0.00 N/A N/A 2.081±0.11 N/A N/A
ENSMUST00000090293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.743±0.00 N/A N/A
ENSMUST00000140485 2.729±0.24 3.248±1.58 2.291±0.62 6.018±3.49 1.227±0.45 4.182±0.87 1.969±0.95 1.269±0.48 2.901±1.44 6.652±0.95 0.376±0.07 1.343±0.48 3.111±1.81 0.434±0.11
ENSMUST00000182085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.690±0.00 15.341±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JQ CIL_0000JQ_0003 CGP 1:60409619-60567104
CIL_0001QX CIL_0001QX_0002 CGP 1:60482292-60773359

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0007165 IEA signal transduction
GO:0031252 IDA cell leading edge
GO:0048675 IMP axon extension

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006301 raph1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein_coding Danio_rerio
ENSDARG00000061732 RAPH1 (2 of 2) Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein_coding Danio_rerio
ENSG00000173166 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein_coding Homo_sapiens

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