C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SMT3 suppressor of mif two 3 homolog 1 (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026021 Sumo1 10090 - 1:59586558-59670834 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000091374 Sumo1-001 59639434-59670834 protein_coding
  ENSMUST00000123857 Sumo1-002 59643996-59670834 retained_intron
  ENSMUST00000185265 Sumo1-004 59639944-59670739 protein_coding
  ENSMUST00000191158 Sumo1-003 59586558-59670792 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000091374ENSMUST00000123857
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000091374 14.211±1.55 8.629±2.59 60.045±1.53 45.798±15.68 11.836±1.43 9.608±1.79 13.044±1.10 17.320±3.14 26.031±19.59 16.786±1.56 34.161±2.49 18.431±20.81 43.269±10.27 29.413±4.56
ENSMUST00000123857 N/A 3.074±0.00 N/A N/A N/A 6.860±1.53 N/A N/A 1.628±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CR CIL_0009CR_0002 VISTA 1:59040862-59642046
CIL_00020N CIL_00020N_0002 CGP 1:59482424-59636417
CIL_00020U CIL_00020U_0002 CGP 1:59516264-59670834
CIL_00020T CIL_00020T_0002 CGP 1:59586558-59719044

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001650 IEA fibrillar center
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006950 IEA response to stress
GO:0008134 IPI transcription factor binding
GO:0016604 IDA nuclear body
GO:0016605 ISS PML body
GO:0016925 ISS protein sumoylation
GO:0019789 IDA SUMO ligase activity
GO:0030425 IEA dendrite
GO:0030578 IMP PML body organization
GO:0031334 IEA positive regulation of protein complex assembly
GO:0031625 ISS ubiquitin protein ligase binding
GO:0031965 IEA nuclear membrane
GO:0032436 IEA positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043392 IEA negative regulation of DNA binding
GO:0043433 IEA negative regulation of sequence-specific DNA binding transcription factor activity
GO:0044822 IEA poly(A) RNA binding
GO:0045202 IEA synapse
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0060021 IMP palate development
GO:0090204 IMP protein localization to nuclear pore

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044267 sumo1 SMT3 suppressor of mif two 3 homolog 1 (yeast) protein_coding Danio_rerio
ENSG00000116030 SUMO1 small ubiquitin-like modifier 1 protein_coding Homo_sapiens

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