C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear antigen Sp100
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026222 Sp100 10090 + 1:85649988-85709998 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000054279 Sp100-004 85650014-85683118 protein_coding
  ENSMUST00000066427 Sp100-007 85650050-85709998 protein_coding
  ENSMUST00000129951 Sp100-009 85671825-85682716 processed_transcript
  ENSMUST00000132641 Sp100-012 85694297-85709406 protein_coding
  ENSMUST00000134283 Sp100-011 85693939-85699671 retained_intron
  ENSMUST00000140758 Sp100-010 85673717-85679326 retained_intron
  ENSMUST00000141709 Sp100-013 85703442-85707995 protein_coding
  ENSMUST00000141998 Sp100-008 85649988-85662871 retained_intron
  ENSMUST00000145440 Sp100-005 85650008-85696368 nonsense_mediated_decay
  ENSMUST00000147552 Sp100-002 85650014-85701572 protein_coding
  ENSMUST00000150967 Sp100-003 85650015-85701139 protein_coding
  ENSMUST00000153574 Sp100-006 85650014-85709198 protein_coding
  ENSMUST00000155094 Sp100-001 85649988-85701561 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000054279ENSMUST00000066427ENSMUST00000132641ENSMUST00000141998ENSMUST00000145440ENSMUST00000147552ENSMUST00000150967ENSMUST00000153574ENSMUST00000155094
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000054279 N/A N/A N/A N/A 0.476±0.00 N/A 0.516±0.00 N/A N/A 0.134±0.00 0.078±0.00
ENSMUST00000066427 11.584±0.00 10.339±3.89 0.103±0.07 4.643±1.41 0.780±0.03 1.959±0.00 2.295±2.15 1.087±0.45 2.765±2.45 0.542±0.03 0.015±0.00
ENSMUST00000132641 N/A 5.577±0.71 N/A N/A N/A N/A 3.124±2.14 1.330±0.00 6.044±0.00 1.410±0.00 0.196±0.00
ENSMUST00000141998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.340±0.00
ENSMUST00000145440 N/A N/A 0.018±0.00 2.203±0.30 0.380±0.02 N/A 0.339±0.07 N/A N/A N/A 0.037±0.00
ENSMUST00000147552 N/A 2.598±0.00 0.050±0.00 N/A N/A N/A 0.704±0.13 1.204±0.31 N/A N/A 0.094±0.00
ENSMUST00000150967 N/A N/A N/A N/A 0.740±0.00 N/A N/A N/A N/A N/A 0.127±0.00
ENSMUST00000153574 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.780±0.00 0.177±0.07
ENSMUST00000155094 N/A N/A 1.300±0.00 N/A N/A N/A 0.919±0.00 N/A 9.721±0.00 1.613±0.93 0.292±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AU CIL_0004AU_0007 CGP 1:85600378-85709998
CIL_0004AU CIL_0004AU_0005 CGP 1:85649988-85778643

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000723 ISS telomere maintenance
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 ISO nucleus
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0010596 ISS negative regulation of endothelial cell migration
GO:0016605 ISO PML body
GO:0030870 ISS Mre11 complex
GO:0045765 ISS regulation of angiogenesis
GO:0046826 ISS negative regulation of protein export from nucleus
GO:1902041 ISS regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:1902044 ISS regulation of Fas signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038133 zgc:113411 zgc:113411 protein_coding Danio_rerio
ENSDARG00000055359 BX569789.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090449 BX569789.4 Uncharacterized protein protein_coding Danio_rerio
ENSG00000067066 SP100 SP100 nuclear antigen protein_coding Homo_sapiens

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