C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026404 Ddx59 10090 + 1:136415271-136440158 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027655 Ddx59-001 136415271-136440158 protein_coding
  ENSMUST00000122959 Ddx59-003 136430183-136432425 processed_transcript
  ENSMUST00000129218 Ddx59-002 136415271-136417792 retained_intron
  ENSMUST00000149783 Ddx59-004 136432402-136434066 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027655ENSMUST00000122959ENSMUST00000149783
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027655 1.894±0.56 0.715±0.28 4.229±0.40 3.532±0.78 1.096±0.59 0.570±0.19 2.053±0.50 2.035±0.42 1.817±0.88 1.233±0.25 4.874±0.36 2.268±1.76 3.262±1.06 2.224±0.49
ENSMUST00000122959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.188±0.00 N/A N/A
ENSMUST00000149783 N/A N/A N/A 5.848±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005VV CIL_0005VV_0002 CGP 1:136268123-136440158
CIL_0005VW CIL_0005VW_0002 CGP 1:136415271-136531511

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0008152 IEA metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022177 ddx59 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 protein_coding Danio_rerio
ENSG00000118197 DDX59 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 protein_coding Homo_sapiens

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