C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: paired related homeobox 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026586 Prrx1 10090 - 1:163245119-163313710 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027878 Prrx1-001 163245119-163313710 protein_coding
  ENSMUST00000075805 Prrx1-002 163245119-163313672 protein_coding
  ENSMUST00000174098 Prrx1-003 163282819-163313671 retained_intron
  ENSMUST00000174397 Prrx1-004 163252866-163313668 protein_coding
  ENSMUST00000183691 Prrx1-005 163247577-163289224 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027878ENSMUST00000075805ENSMUST00000174397ENSMUST00000183691
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027878 6.379±2.75 1.253±0.40 2.572±0.03 1.723±0.07 5.816±2.97 0.097±0.08 3.840±2.11 0.814±0.19 0.054±0.03 1.630±0.45 4.403±2.85 5.996±2.15 0.456±0.54 0.137±0.04
ENSMUST00000075805 0.999±0.08 0.619±0.00 1.570±0.19 0.382±0.14 2.467±0.25 N/A 1.174±0.00 0.408±0.14 0.038±0.04 1.174±0.00 4.837±1.03 2.107±0.86 0.351±0.29 0.199±0.12
ENSMUST00000174397 2.113±0.82 0.464±0.15 N/A 0.527±0.02 2.210±0.39 0.036±0.01 0.629±0.00 0.195±0.06 0.018±0.01 1.020±0.03 N/A 1.328±0.26 0.123±0.14 0.058±0.01
ENSMUST00000183691 5.780±2.32 N/A N/A 0.309±0.00 6.156±0.00 N/A 4.463±1.00 0.652±0.12 0.072±0.03 1.654±0.32 N/A N/A N/A 0.232±0.15

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0002053 IGI positive regulation of mesenchymal cell proliferation
GO:0003677 IDA DNA binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0030326 IGI embryonic limb morphogenesis
GO:0042472 IGI inner ear morphogenesis
GO:0042474 IMP middle ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045880 IGI positive regulation of smoothened signaling pathway
GO:0048701 IMP embryonic cranial skeleton morphogenesis
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048844 IGI artery morphogenesis
GO:0051216 IMP cartilage development
GO:0060021 IMP palate development
GO:0071837 IPI HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033971 prrx1a paired related homeobox 1a protein_coding Danio_rerio
ENSDARG00000042027 prrx1b paired related homeobox 1b protein_coding Danio_rerio
ENSG00000116132 PRRX1 paired related homeobox 1 protein_coding Homo_sapiens

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