C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat and sterile alpha motif containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026792 Lrsam1 10090 - 2:32925216-32961614 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028132 Lrsam1-201 32925216-32961255 protein_coding
  ENSMUST00000113200 Lrsam1-001 32925220-32961614 protein_coding
  ENSMUST00000124492 Lrsam1-002 32957249-32961593 protein_coding
  ENSMUST00000127321 Lrsam1-006 32954221-32961599 protein_coding
  ENSMUST00000133832 Lrsam1-004 32954223-32961592 protein_coding
  ENSMUST00000138015 Lrsam1-005 32961074-32961606 processed_transcript
  ENSMUST00000145578 Lrsam1-003 32957256-32961593 protein_coding
  ENSMUST00000145699 Lrsam1-007 32960247-32961600 processed_transcript
  ENSMUST00000147528 Lrsam1-008 32954236-32959906 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartKidneyLiverOvaryTestisENSMUST00000028132ENSMUST00000113200
Transcript ID Adipose Adrenal Brain Heart Kidney Liver Ovary Testis
ENSMUST00000028132 N/A 11.350±1.19 5.487±0.00 N/A N/A 5.115±0.99 10.435±1.15 N/A
ENSMUST00000113200 8.135±0.29 N/A 6.561±2.34 4.381±0.35 6.066±0.78 4.800±0.02 N/A 3.382±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0002 VISTA 2:32608279-33209524
CIL_0000HA CIL_0000HA_0002 CGP 2:32787602-32925254
CIL_0002XQ CIL_0002XQ_0002 CGP 2:32925216-32964496

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000209 ISS protein polyubiquitination
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005737 ISS cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016020 ISS membrane
GO:0016874 IEA ligase activity
GO:0030163 ISS protein catabolic process
GO:0045806 ISS negative regulation of endocytosis
GO:0046755 ISS viral budding
GO:0051865 ISS protein autoubiquitination
GO:0070086 ISS ubiquitin-dependent endocytosis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060683 lrsam1 leucine rich repeat and sterile alpha motif containing 1 protein_coding Danio_rerio
ENSG00000148356 LRSAM1 leucine rich repeat and sterile alpha motif containing 1 protein_coding Homo_sapiens

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